Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0448
(702 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g01800.1 68416.m00122 ribosome recycling factor family protei... 44 1e-04
At3g63190.1 68416.m07099 ribosome recycling factor, chloroplast,... 39 0.003
At5g46070.1 68418.m05665 guanylate-binding family protein contai... 34 0.10
At5g15920.1 68418.m01862 structural maintenance of chromosomes (... 32 0.42
At5g37160.1 68418.m04461 tRNA-splicing endonuclease positive eff... 29 2.3
At5g54820.1 68418.m06828 F-box family protein contains Pfam:PF00... 29 3.0
At5g21930.1 68418.m02545 ATPase E1-E2 type family protein / halo... 29 3.9
At5g07000.1 68418.m00793 sulfotransferase family protein similar... 29 3.9
At5g37180.1 68418.m04464 sucrose synthase, putative / sucrose-UD... 28 5.2
At3g57130.1 68416.m06360 ankyrin repeat family protein / BTB/POZ... 28 5.2
At5g28830.1 68418.m03546 calcium-binding EF hand family protein ... 27 9.1
At5g19020.1 68418.m02260 pentatricopeptide (PPR) repeat-containi... 27 9.1
At2g23420.1 68415.m02796 nicotinate phosphoribosyltransferase fa... 27 9.1
>At3g01800.1 68416.m00122 ribosome recycling factor family protein /
ribosome releasing factor family protein similar to
SP|P82231 Ribosome recycling factor, chloroplast
precursor (Ribosome releasing factor, chloroplast) (RRF)
(CpFrr) (RRFHCP) {Spinacia oleracea}; contains Pfam
profile PF01765: ribosome recycling factor
Length = 267
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/44 (45%), Positives = 27/44 (61%)
Frame = +2
Query: 260 PQVIPEALKAISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAK 391
P + E KAI +S L LNP+ DG L +P +TKEH +A+ K
Sbjct: 156 PDTVKELEKAIVASPLGLNPKLDGQRLVASIPALTKEHIQAMCK 199
>At3g63190.1 68416.m07099 ribosome recycling factor, chloroplast,
putative / ribosome releasing factor, chloroplast,
putative similar to SP|P82231 Ribosome recycling factor,
chloroplast precursor (Ribosome releasing factor,
chloroplast) (RRF) (CpFrr) (RRFHCP) {Spinacia oleracea};
contains Pfam profile PF01765: ribosome recycling factor
Length = 275
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/72 (30%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Frame = +2
Query: 284 KAISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAKNAKVLYIKCRDALKDIQNENIK-- 457
KAI +S L + P DG + + +P +T + R+ L+K + + AL++I+ + +K
Sbjct: 170 KAIVNSDLGVTPNNDGDVIRLSLPPLTSDRRKELSKVVAKQSEEGKVALRNIRRDALKSY 229
Query: 458 -KMKKQTGVSED 490
K++K+ +SED
Sbjct: 230 DKLEKEKKLSED 241
>At5g46070.1 68418.m05665 guanylate-binding family protein contains
Pfam domains PF02263: Guanylate-binding protein,
N-terminal domain and PF02841: Guanylate-binding
protein, C-terminal domain
Length = 1060
Score = 33.9 bits (74), Expect = 0.10
Identities = 20/68 (29%), Positives = 36/68 (52%)
Frame = +3
Query: 18 KVEINMAVLSELIPVDKMKDRCSAAIENMKADFAKHLSIRSTTGSIDTIPVKFEGKEYEL 197
K+ + SE D++K+RC AA ++A A L+ ++ T ++ + K E + +
Sbjct: 748 KIRMEQKYRSEFQRFDEVKERCKAA--EIEAKRATELADKARTDAVTSQKEKSESQRLAM 805
Query: 198 QELAQIVR 221
+ LAQI R
Sbjct: 806 ERLAQIER 813
>At5g15920.1 68418.m01862 structural maintenance of chromosomes
(SMC) family protein (MSS2) similar to SMC-related
protein MSS2 [Arabidopsis thaliana] GI:9965743; contains
Pfam profiles PF02483: SMC family C-terminal domain,
PF02463: RecF/RecN/SMC N terminal domain
Length = 1053
Score = 31.9 bits (69), Expect = 0.42
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +2
Query: 356 KVTKEHREALAKNAKVLYIKCRDALKDIQNENIKKMKKQTGVSEDLIFN 502
K KE E L + +C D LKD++N N K +K D IF+
Sbjct: 389 KNQKEDNEKLLSQKRYTLRQCVDKLKDMENANNKLLKALANSGADRIFD 437
>At5g37160.1 68418.m04461 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 871
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Frame = +2
Query: 362 TKEHREALAKNAKV-LYIK-CRDALKDIQNENIKKMKKQT 475
TKE R+ L KN + L+ + C +LKDI NE++ K K T
Sbjct: 3 TKEIRKLLEKNEQTSLFARLCSWSLKDILNEDLSKEKIMT 42
>At5g54820.1 68418.m06828 F-box family protein contains Pfam:PF00646
F-box domain
Length = 472
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -2
Query: 542 NRYFSHKAFICSFR*ILNLQIHQSVSSFSLCF-HFV 438
+R ++++F CS +++ HQ V SF +CF H V
Sbjct: 67 SRIVAYRSFFCSVDKWVSITQHQVVESFEICFSHLV 102
>At5g21930.1 68418.m02545 ATPase E1-E2 type family protein /
haloacid dehalogenase-like hydrolase family protein /
heavy-metal-associated domain-containing protein
contains InterPro accession IPR001757: ATPase, E1-E2
type; contains Pfam profiles PF00403:
Heavy-metal-associated domain, PF00702: haloacid
dehalogenase-like hydrolase
Length = 883
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +2
Query: 341 FVPVPKVTKEHREALAKNAKVLYIKCRDALKDIQ-NENIKKMKKQTGVSEDLIFNGTNK 514
F P +VT + E+LAK + + + + EN+KK K+ EDL+ N+
Sbjct: 120 FKPEVEVTADTAESLAKRLTESGFEAKRRVSGMGVAENVKKWKEMVSKKEDLLVKSRNR 178
>At5g07000.1 68418.m00793 sulfotransferase family protein similar to
steroid sulfotransferase 3 [Brassica napus] GI:3420008,
steroid sulfotransferase 1 [Brassica napus] GI:3420004;
contains Pfam profile PF00685: Sulfotransferase domain
Length = 347
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +2
Query: 374 REALAKNAKVLYIKCRDALKDIQNENIKKMKKQTGV 481
RE+L + KVL++K D +DI+ N+KK+ G+
Sbjct: 230 RESLKRPEKVLFLKYEDLKEDIET-NLKKLASFLGL 264
>At5g37180.1 68418.m04464 sucrose synthase, putative / sucrose-UDP
glucosyltransferase, putative similar to sucrose
synthase GI:6682841 from [Citrus unshiu]
Length = 836
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +2
Query: 275 EALKAISSSGLNLNPQQDGTTLFVPVPKVTKEHRE 379
E L+ I+S GLN PQ T +P K TK ++E
Sbjct: 311 ELLQRINSQGLNFKPQILVVTRLIPDAKKTKCNQE 345
>At3g57130.1 68416.m06360 ankyrin repeat family protein / BTB/POZ
domain-containing protein contains Pfam domain, PF00023:
Ankyrin repeat and Pfam domain, PF00651: BTB/POZ domain
Length = 467
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/72 (22%), Positives = 35/72 (48%)
Frame = +2
Query: 236 DSNKLLSFPQVIPEALKAISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAKNAKVLYIK 415
+ NKL +++ A IS N N + T ++ P++ EH + +++++Y+
Sbjct: 372 EPNKLRLCLELVQSAALVISREEGNNNSNDNNTMIY---PRMKDEHTSGSSLDSRLVYLN 428
Query: 416 CRDALKDIQNEN 451
+DI ++N
Sbjct: 429 LGATNRDIGDDN 440
>At5g28830.1 68418.m03546 calcium-binding EF hand family protein
contains INTERPRO:IPR002048 calcium-binding EF-hand
domain
Length = 324
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 195 LQELAQIVRKNPKTIVINFSLFPKS 269
LQE+A ++ + P TIV+N +F S
Sbjct: 195 LQEIADVLHEKPITIVLNVEIFTGS 219
>At5g19020.1 68418.m02260 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 939
Score = 27.5 bits (58), Expect = 9.1
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 321 NKMELHCLCLCLKSQR 368
N + ++CLCLCLK R
Sbjct: 467 NLLHMYCLCLCLKDAR 482
>At2g23420.1 68415.m02796 nicotinate phosphoribosyltransferase
family protein / NAPRTase family protein contains Pfam
domain PF04095: Nicotinate phosphoribosyltransferase
(NAPRTase)
Length = 557
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 51 LIPVDKMKDRCSAAIENMKADFAKHLS 131
L P+ +++DRC +ENM+ D + L+
Sbjct: 501 LPPLKEIRDRCIKQLENMRPDHMRRLN 527
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,682,851
Number of Sequences: 28952
Number of extensions: 293681
Number of successful extensions: 675
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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