Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0445
(769 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 31 0.24
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te... 30 0.32
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 29 0.73
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ... 27 2.2
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 27 3.0
SPAC17H9.12c |||NADH-cytochrome reductase|Schizosaccharomyces po... 27 3.0
SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr... 27 3.0
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 3.0
SPAC23H4.10c |thi4||thiamine-phosphate dipyrophosphorylase/hydro... 27 3.9
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa... 26 5.2
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 26 5.2
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ... 26 6.8
SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual 25 9.0
SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr ... 25 9.0
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 30.7 bits (66), Expect = 0.24
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = -2
Query: 351 HNTKYNQYLKMSTTTCNCNSRDRVVYGGNSA 259
+++ YN+ M T++C+C+S + YGGN A
Sbjct: 47 YSSTYNEITNMDTSSCSCSSTPK-SYGGNLA 76
>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
termination factor Reb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 504
Score = 30.3 bits (65), Expect = 0.32
Identities = 10/38 (26%), Positives = 23/38 (60%)
Frame = -2
Query: 663 SIIQNVVNNLIIDKRRNTMEYCYKLWVGNGQEIVRKYF 550
+II V+N I+D+ + ++C ++W G + +R ++
Sbjct: 247 AIISQEVHNFIMDQGWSEYQFCNQIWAGKCPKTIRMFY 284
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 29.1 bits (62), Expect = 0.73
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -2
Query: 351 HNTKYNQYLKMSTTTCNCNSRDRVVYGGNSA 259
HN +N + + S T+ + SR+ V+ GNS+
Sbjct: 617 HNEMFNSFHRSSVTSASIKSREAVLSAGNSS 647
>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 255
Score = 27.5 bits (58), Expect = 2.2
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -2
Query: 762 NQDLEEKLYNSILTGDYDSAVRQSLEYESQGKGSII 655
N+D+ K+ L G Y +A ++ QGKGS+I
Sbjct: 109 NEDIWTKVVGINLNGAYYTAQAAGHHFKKQGKGSLI 144
>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
2|||Manual
Length = 918
Score = 27.1 bits (57), Expect = 3.0
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
Frame = +1
Query: 547 WEVLSNNFLS--VADPQL---VAVLHGVPSLVNDQVVNYILD 657
W+VL +++L+ ++ P V LHGV + VN V +YI D
Sbjct: 188 WDVLFHDYLNETLSQPAFSFNVPDLHGVDNKVNQYVFDYIKD 229
>SPAC17H9.12c |||NADH-cytochrome reductase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 266
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -3
Query: 578 TDRKLLESTSH*TLDSSWPETMSNHLQKLQPRSEARFHNQSLE 450
T K+ E TS +L S P++ S HL L+P ++ + S++
Sbjct: 46 TVNKITELTSDASLFSLVPQSPSEHLTTLEPIAKVTIRDPSMQ 88
>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
2|||Manual
Length = 539
Score = 27.1 bits (57), Expect = 3.0
Identities = 12/46 (26%), Positives = 26/46 (56%)
Frame = +2
Query: 398 QLTSSVCLSTPSP*NSLIRGIGCGTELQSEVVVSVNDLT*FPAMMS 535
+L SS ++ +P + I GT+ Q+++++ L FP+++S
Sbjct: 297 ELLSSPSVNIQTPALRSVGNIVTGTDAQTQIIIDCGALNAFPSLLS 342
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 27.1 bits (57), Expect = 3.0
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -2
Query: 762 NQDLEEKLYNSILTGDYDSAVRQSLE 685
+ DLE+ + ++LTGD SAV+ LE
Sbjct: 551 DSDLEKNITEALLTGDVLSAVKACLE 576
>SPAC23H4.10c |thi4||thiamine-phosphate
dipyrophosphorylase/hydroxyethylthiazole kinase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 518
Score = 26.6 bits (56), Expect = 3.9
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 147 TPRETARPLDTMVKSPVFLTSTRGSLHLSK 58
TPRETA+ L ++ +P R SL K
Sbjct: 207 TPRETAKELRNLIATPPCFAQARSSLTTPK 236
>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 889
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -2
Query: 660 IIQNVVNNLIIDKRRNTMEYCYKLWVGNGQEIVR 559
+++++ NL I N +EY LW NG I +
Sbjct: 447 VLKDIFFNLQIGVTFNILEYLRHLWSNNGDAIAK 480
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 26.2 bits (55), Expect = 5.2
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = -3
Query: 611 PWSTATSCGSATDRKLLESTSH*TLDSSWPETMSNHLQKLQPRSEARFHNQSL 453
P + S G +D LL ST H +L SS T + + R H SL
Sbjct: 734 PRQYSYSAGMKSDGSLLPSTKHTSLSSSSTSTSLSVRNTTNVKIRLRLHEVSL 786
>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 678
Score = 25.8 bits (54), Expect = 6.8
Identities = 38/148 (25%), Positives = 64/148 (43%), Gaps = 6/148 (4%)
Frame = +2
Query: 326 KY-WLYLVLWILKYTLLFSHKVMNFQLTSSVCLSTPSP*NSLIRGIGC-GTELQSEVVVS 499
KY W + W + T K ++ SV +S+ +P +SLI + C + + ++ S
Sbjct: 21 KYSWYSVKRWQSQLTFRNKSKRNTNRIMLSV-VSSLNP-DSLIAPLLCVSLDNRKYLIGS 78
Query: 500 VNDLT*FP-AMMSLKFNGKYFLTISCPLPTHSL*QYSM---VFRLLSMIRLLTTFWMMEP 667
+ +LT + + GK P SL + + +F L + T+ + P
Sbjct: 79 MGELTQMKFRSQASNYGGKSVSVFLMPPSLQSLNAWGITAGLFGYLQSSGIQNTWGLHAP 138
Query: 668 LPWLSYSKL*RTALS*SPVRMLLYSFSS 751
P +S K S SP+R+ L SFSS
Sbjct: 139 KPVISIIKKSHHLFSGSPLRLDLNSFSS 166
>SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 405
Score = 25.4 bits (53), Expect = 9.0
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2
Query: 392 NFQLTSSVCLSTPSP*NSLIRGIGCGTELQSEVVVSVN 505
+F L++ V LSTPSP N + +G S+++ ++
Sbjct: 284 DFTLSTEVTLSTPSPINLYEKELGIKHTPNSKIINQIS 321
>SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 339
Score = 25.4 bits (53), Expect = 9.0
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -1
Query: 514 CQIIYRNYNLALKLGSTTNPSNERILRRWCRQAY*TRQLEVHYL 383
C I N+NLA K S T +I R A+ + + HYL
Sbjct: 285 CFYITENFNLAQKGASLTKKELVQICRNSFEAAWISEEKRNHYL 328
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,011,790
Number of Sequences: 5004
Number of extensions: 60292
Number of successful extensions: 179
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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