Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0445
         (769 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_27291| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_48991| Best HMM Match : Rad52_Rad22 (HMM E-Value=5.2e-12)           28   9.5  
SB_3503| Best HMM Match : Rad52_Rad22 (HMM E-Value=1e-24)              28   9.5  
SB_42606| Best HMM Match : Ank (HMM E-Value=3.4e-08)                   28   9.5  

>SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 441

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 16/56 (28%), Positives = 23/56 (41%)
 Frame = +3

Query: 579 CRPTACSSTPWCSVSCQ*SGC*LHSG*WSPCLGSHIPSSDGQHCRSRR*GCCCTVS 746
           C+   CS++  C  SC   GC L+    +         +    C+SR  G  CT S
Sbjct: 224 CQQVVCSASGKCDQSCDGEGCNLYCSEGAKTCNQKCQGACVTDCKSRWCGVTCTGS 279


>SB_27291| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
 Frame = +2

Query: 386 VMNFQLTSSVCLSTPSP*NSLIRGIGCGTELQSEVVVSVNDLT*FPAMMSLKFN-----G 550
           V  + LT S C+S     N+L+R   C T   +++ +S N L  +PA   ++FN      
Sbjct: 51  VAQYALTLS-CMSH----NTLLRYPACHTISFADICMSPNMLLRYPACHVIRFNAILHVA 105

Query: 551 KYFLTISC 574
           +Y LT+SC
Sbjct: 106 QYALTLSC 113


>SB_48991| Best HMM Match : Rad52_Rad22 (HMM E-Value=5.2e-12)
          Length = 353

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -3

Query: 767 TSTKTSRRNCTTASSPATTTV 705
           TS  +S RNCTT  + +TTTV
Sbjct: 136 TSEDSSNRNCTTPINQSTTTV 156


>SB_3503| Best HMM Match : Rad52_Rad22 (HMM E-Value=1e-24)
          Length = 398

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -3

Query: 767 TSTKTSRRNCTTASSPATTTV 705
           TS  +S RNCTT  + +TTTV
Sbjct: 181 TSEDSSNRNCTTPINQSTTTV 201


>SB_42606| Best HMM Match : Ank (HMM E-Value=3.4e-08)
          Length = 551

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = -3

Query: 614 TPWSTATSCGSATDRKLLES----TSH*TLDSSWPETMSNHLQK 495
           TP+  A +CGS  + KLL+S     SH +   S+  ++  H+ +
Sbjct: 283 TPYQVALACGSTRNAKLLDSHREKKSHYSATGSFDGSVEEHISE 326


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,297,108
Number of Sequences: 59808
Number of extensions: 486124
Number of successful extensions: 1229
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1228
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)