Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0445
         (769 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g64255.1 68414.m07280 SWIM zinc finger family protein contain...    32   0.48 
At5g59210.2 68418.m07421 myosin heavy chain-related contains wea...    31   0.85 
At5g59210.1 68418.m07420 myosin heavy chain-related contains wea...    31   0.85 
At4g13310.2 68417.m02080 cytochrome P450 71A20, putative (CYP71A...    28   6.0  
At4g13310.1 68417.m02081 cytochrome P450 71A20, putative (CYP71A...    28   6.0  
At3g04460.1 68416.m00473 Pex2/Pex12 N-terminal domain-containing...    28   7.9  

>At1g64255.1 68414.m07280 SWIM zinc finger family protein contains
           Pfam profile PF04434: SWIM zinc finger
          Length = 750

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 636 LIIDKRRNTMEYCYKLWVGNGQEIVRKYFPLNF 538
           +++D +    EY  KL + +G +   KYFPL F
Sbjct: 386 IVVDTKNLNCEYQLKLMIASGVDAANKYFPLAF 418


>At5g59210.2 68418.m07421 myosin heavy chain-related contains weak
           similarity to Myosin heavy chain, gizzard smooth muscle
           (Swiss-Prot:P10587) [Gallus gallus]
          Length = 433

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
 Frame = -2

Query: 762 NQDLE-EKLY--NSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLIIDKRR 616
           NQ  E EKL+  NS L+  Y  ++  S ++E+Q K  + QNV    ++DK R
Sbjct: 292 NQSSEIEKLFEENSNLSASYQESINISNQWENQVKECLKQNVELREVLDKLR 343


>At5g59210.1 68418.m07420 myosin heavy chain-related contains weak
           similarity to Myosin heavy chain, gizzard smooth muscle
           (Swiss-Prot:P10587) [Gallus gallus]
          Length = 434

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
 Frame = -2

Query: 762 NQDLE-EKLY--NSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLIIDKRR 616
           NQ  E EKL+  NS L+  Y  ++  S ++E+Q K  + QNV    ++DK R
Sbjct: 293 NQSSEIEKLFEENSNLSASYQESINISNQWENQVKECLKQNVELREVLDKLR 344


>At4g13310.2 68417.m02080 cytochrome P450 71A20, putative (CYP71A20)
           Identical to Cytochrome P450 (SP:Q9T0K2) [Arabidopsis
           thaliana]; similar to cytochrome P450 71A4, Solanum
           melongena, PIR2:S36805
          Length = 390

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -2

Query: 744 KLYNSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLII 628
           K+ + IL+G  D A     EY  Q K   IQN++NN ++
Sbjct: 103 KVVDKILSGGRDVAFAPYGEYWRQMKSICIQNLLNNKMV 141


>At4g13310.1 68417.m02081 cytochrome P450 71A20, putative (CYP71A20)
           Identical to Cytochrome P450 (SP:Q9T0K2) [Arabidopsis
           thaliana]; similar to cytochrome P450 71A4, Solanum
           melongena, PIR2:S36805
          Length = 497

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -2

Query: 744 KLYNSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLII 628
           K+ + IL+G  D A     EY  Q K   IQN++NN ++
Sbjct: 103 KVVDKILSGGRDVAFAPYGEYWRQMKSICIQNLLNNKMV 141


>At3g04460.1 68416.m00473 Pex2/Pex12 N-terminal domain-containing
           protein similar to SP|O00623 Peroxisome assembly protein
           12 (Peroxin-12) (Peroxisome assembly factor-3) (PAF-3)
           {Homo sapiens}; contains Pfam profile PF04757: Pex2 /
           Pex12 amino terminal region
          Length = 393

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = +3

Query: 396 SN*RVQYACLHHRRRILSFEGLVVEPSFRARL 491
           S+  VQ++ L  R+RILS   LVV P F+++L
Sbjct: 100 SSEEVQHSGLEKRQRILSVVFLVVLPYFKSKL 131


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,994,478
Number of Sequences: 28952
Number of extensions: 319985
Number of successful extensions: 812
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)