Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0440
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    31   0.25 
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    29   0.77 
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    27   3.1  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    26   5.4  
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha...    26   5.4  
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   7.2  
SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated |Schizosaccharom...    25   9.5  
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce...    25   9.5  

>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 428 SGCGRCRVWSMFVRYVRFSELVF*YNAPQKLYIF 529
           +GCG+  VW  +VR+V F E    +     LY++
Sbjct: 108 NGCGKSYVWPSYVRFVDFDERYTRFANKYSLYLY 141


>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -1

Query: 611 ARKIRGRPENAGPDPVRNVRRFSRV 537
           AR I GRPEN G   ++N+ R S+V
Sbjct: 214 ARTIPGRPENGGNCDIKNLSRGSKV 238


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1274

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = -2

Query: 625  RHDLRLG-RSAEGRRTRVRIQSET*DDFRECHIKYIQFLRRIILKY*LAKTNITHE 461
            + D +LG + A   + +V + S+  D  +E H+KY+Q   +  L+  LAK +I  E
Sbjct: 1053 KEDTKLGEKCANIVQLQVDLLSKLADQEKEKHLKYLQSSYKNSLEVQLAKLDIVKE 1108


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 24/87 (27%), Positives = 36/87 (41%)
 Frame = -1

Query: 800 FFTLTFRALAEITCVNTREGHRNALF*LDSRIPLVRASSELTVERRSYRIVPIAHETKPT 621
           F  L  R LA+      RE +R + + L    P V+     T+E     ++   H   P 
Sbjct: 449 FEKLICRGLADSNS-QVREVYRKSFWKLSEYFPSVQEELTNTLEPS---VLKQLHLANPN 504

Query: 620 RLTARKIRGRPENAGPDPVRNVRRFSR 540
           R  A      P+ A   P+ N+R FS+
Sbjct: 505 RQAASFNFSGPKRAPIRPLSNLRSFSK 531


>SPAPJ696.02 |||actin cortical patch component Lsb4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 22/90 (24%), Positives = 41/90 (45%)
 Frame = -1

Query: 689 SSELTVERRSYRIVPIAHETKPTRLTARKIRGRPENAGPDPVRNVRRFSRVSY*IYTVFE 510
           SS+++ E  S      +  +KP+R TA K + + ++ GP+  R +  F+       +  +
Sbjct: 335 SSDVSTESSSQFSSRSSEYSKPSRPTAPKPKFKQDSLGPNQARAMYSFAGEQPGDLSFQK 394

Query: 509 AHYIKILTR*NEHNARTSTRPGTGRIRFPS 420
              I I+ R   H+   + R G     FP+
Sbjct: 395 GDIIDIVERSGSHDDWWTGRIGYREGIFPA 424


>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = -3

Query: 207 MRCSSRSEPYLPSI-GFHGTRTLRQKRKLFPDLSAASSGHFGLPRRT 70
           MR +   E Y+  + G H   T  Q   LF D     + H  L RRT
Sbjct: 1   MRPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRT 47


>SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 233

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 465 TNIDQTRHRPHPLPVQTRHAPV 400
           +N+D  +  PHP P Q    PV
Sbjct: 100 SNLDSVKSLPHPWPFQKESRPV 121


>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 353 FPYLHYSID*RLFTLETCCGYGYEPARHL 267
           +P+   S+D R+F LE+  GY  EP   L
Sbjct: 159 YPFDLDSLDKRIFKLESKIGYADEPLSEL 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,424,494
Number of Sequences: 5004
Number of extensions: 73487
Number of successful extensions: 206
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)