Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0440
         (800 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0098 + 25560158-25560925                                         36   0.028
02_02_0346 - 9214365-9214583,9214830-9214919,9215012-9215177,921...    31   0.81 
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309...    31   1.1  
06_01_0350 + 2534422-2535615                                           31   1.4  
12_02_0407 - 18654134-18654172,18654913-18655803                       30   2.5  
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729...    29   3.3  
06_01_0268 + 1989069-1989293,1989938-1990020,1990136-1990357,199...    29   5.7  
04_03_0732 + 19095320-19095827,19095848-19096621,19096863-190969...    29   5.7  
01_07_0257 - 42343493-42343528,42344215-42344271,42344272-423443...    29   5.7  
12_02_0372 + 18212948-18213821,18213887-18214030,18214128-182142...    28   7.5  
07_03_0078 - 13147741-13148913                                         28   7.5  
04_04_0158 - 23187070-23187264,23187347-23187477,23187550-231877...    28   7.5  
12_02_0854 + 23697826-23698033,23699111-23699276,23699430-236994...    28   9.9  
11_08_0081 - 28216179-28216381,28216590-28216657,28217131-282172...    28   9.9  
05_04_0162 + 18645459-18645827,18645934-18646149,18646224-186462...    28   9.9  

>05_06_0098 + 25560158-25560925
          Length = 255

 Score = 36.3 bits (80), Expect = 0.028
 Identities = 18/65 (27%), Positives = 28/65 (43%)
 Frame = -3

Query: 444 HRPHPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALHLGDLLRIWVRTGATSP 265
           HRP P P  +   P L  +P + V   I   P PT F + +      ++++   +  T P
Sbjct: 31  HRPPPPPPSSSSQPALPPSPRTVVPRTIDTTPFPTTFVQADTASFKQVVQMLTGSDTTPP 90

Query: 264 RTSPP 250
              PP
Sbjct: 91  SQRPP 95


>02_02_0346 -
           9214365-9214583,9214830-9214919,9215012-9215177,
           9215601-9215911,9215944-9216566,9216779-9216968,
           9217096-9217197,9217285-9217425,9217815-9218411,
           9219126-9219286,9220709-9220824,9221538-9221654,
           9221746-9221808,9221879-9221949
          Length = 988

 Score = 31.5 bits (68), Expect = 0.81
 Identities = 27/78 (34%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
 Frame = -3

Query: 255 PPEFSRSA-ESIRTPPQM------RCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASS 97
           PP+ SRS  ES R  P          S   +  +   GFHG   L+   KL PDL +   
Sbjct: 169 PPKRSRSKQESSRASPMKLIKLYPHMSGEQKRLIEGAGFHGLVDLKCS-KLRPDLCSWLM 227

Query: 96  GHFGLPRRTLVFKDEGTI 43
            HF      LVF   G I
Sbjct: 228 EHFNPATNQLVFPGRGAI 245


>03_04_0090 +
           17228253-17228403,17229062-17229129,17229238-17230902,
           17231002-17231143,17231648-17232399
          Length = 925

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
 Frame = -3

Query: 465 TNIDQTRH------RPHPLPVQTRHAPVLRANP 385
           T IDQ  H      + H +PVQ  H+PVL+ NP
Sbjct: 324 TQIDQPSHCQRIKNQDHSVPVQKNHSPVLKTNP 356


>06_01_0350 + 2534422-2535615
          Length = 397

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -2

Query: 160 PWNSNAQAEKKTLPGPLGGVFRP 92
           PW S+A+ E+K LP PL  +F P
Sbjct: 42  PWRSSARLERKLLPPPLPWLFLP 64


>12_02_0407 - 18654134-18654172,18654913-18655803
          Length = 309

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +2

Query: 17  EPGSGTVSIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFCLSVRVPWNPIEGRY 181
           E G+G ++++ PS+ +T      P+ P     R     + CLS    ++PI GRY
Sbjct: 115 EEGTGRLTLVNPSTGETLAVPPPPRLPPKRRHRRAPLVVSCLS--FGYHPITGRY 167


>12_01_0796 +
           7292523-7292783,7292963-7293018,7295274-7295331,
           7295777-7295843,7296461-7296516,7296638-7296691,
           7296836-7296961
          Length = 225

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 435 HPLPVQTRHAPVLRANPYSEVTDPICRLPL 346
           H L +  RH P L+A P S +    C+LPL
Sbjct: 107 HSLIIPKRHFPSLQATPPSVIAAICCKLPL 136


>06_01_0268 +
           1989069-1989293,1989938-1990020,1990136-1990357,
           1990434-1990621,1990711-1990835,1990988-1991039,
           1991585-1991874,1992229-1992307,1992527-1992657
          Length = 464

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 429 LPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEAL 316
           +P Q + A  + A+P + V    C LP P+LF  L  L
Sbjct: 292 IPYQFQEATSILASPLAHVPASSCPLPAPSLFSSLPLL 329


>04_03_0732 +
           19095320-19095827,19095848-19096621,19096863-19096906,
           19097191-19097250
          Length = 461

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 441 RPHPLPVQTRHAPVLRANPYSEVTDP 364
           RP+PL V +RHA VL    +  V DP
Sbjct: 133 RPNPLDVVSRHAGVLSRGDHCLVVDP 158


>01_07_0257 -
           42343493-42343528,42344215-42344271,42344272-42344316,
           42344374-42344518,42344606-42344733,42344939-42345044,
           42345113-42345189,42345264-42345361,42345945-42346058,
           42346154-42346294,42346418-42346502,42346721-42346849
          Length = 386

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 305 TCCGYGYEPARHLHVHPHLNFQGP 234
           +CCG+     R+  + PHLN  GP
Sbjct: 135 SCCGFEEVLERYRQIVPHLNLSGP 158


>12_02_0372 +
           18212948-18213821,18213887-18214030,18214128-18214273,
           18214854-18214862
          Length = 390

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = -3

Query: 273 TSPRTSPPEFSRSAESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPD 115
           T P   P + ++   S  T PQ R  S+ + ++ S G      L+QK +   D
Sbjct: 83  TQPHPRPKQPTKPPPSSSTQPQQRHQSQVKKHISSAGLQVESVLQQKAENLKD 135


>07_03_0078 - 13147741-13148913
          Length = 390

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +1

Query: 571 SGPAFSGLPRIFLAVSRVGFVSCAI 645
           SGP + G  R+F+A+S +G ++ ++
Sbjct: 223 SGPIYKGRERVFIAISDIGMLAVSL 247


>04_04_0158 -
           23187070-23187264,23187347-23187477,23187550-23187763,
           23187834-23187932,23188034-23188156,23188247-23188366,
           23188447-23188506,23188592-23188884,23189554-23189707,
           23189813-23190130,23190668-23190798,23191001-23191586,
           23192125-23192739
          Length = 1012

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 34/125 (27%), Positives = 46/125 (36%), Gaps = 11/125 (8%)
 Frame = -3

Query: 438 PHPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALHLGDLLRIWVRTGATSPRT 259
           PHP P     A      P   +  PI   P P L  +     + D LR      A  P  
Sbjct: 7   PHPSPPLLPPAASRTRPPPRLLLPPIHASPSPELLAKSALRRISDKLRSLGYLEADHPEA 66

Query: 258 SP----PEFSRSAES----IRTP---PQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDL 112
           +P    PE    A      + TP   P+ R  S  +P   +    G    R++R+   D 
Sbjct: 67  APGPAAPEAGAGASPGEIFVPTPAQLPRHRVGSTLDPSWATGDGEGAAASRRRRRGGRDS 126

Query: 111 SAASS 97
           SAA+S
Sbjct: 127 SAAAS 131


>12_02_0854 +
           23697826-23698033,23699111-23699276,23699430-23699466,
           23699531-23700145
          Length = 341

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 15/25 (60%), Positives = 16/25 (64%)
 Frame = -1

Query: 467 ARTSTRPGTGRIRFPSKPDTPRSSE 393
           A TST PG GR R PS P TP  S+
Sbjct: 16  AATSTDPGRGRKRPPS-PSTPTPSD 39


>11_08_0081 -
           28216179-28216381,28216590-28216657,28217131-28217298,
           28217370-28217436,28217509-28217576,28218256-28218420,
           28218490-28218556,28218629-28218696,28219855-28219992,
           28220189-28220353,28221227-28221304,28221380-28221532,
           28222753-28222823,28223077-28223203,28223306-28223565,
           28223679-28223842,28224287-28224450,28225873-28226159
          Length = 826

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
 Frame = -3

Query: 483 LKRT*RTNIDQTRHRPHPLPVQTRHAPVLRANPYSEVTDP--ICRLPLPTLFYRLEALHL 310
           +K +   N+D    RP P PV       LRA PY     P  +  + L  +   L ++++
Sbjct: 1   MKPSPAANLDVRVERPRPPPVHPHRPGSLRARPYYRRWTPWIVAAIALSCVVVFLVSMYV 60

Query: 309 GDLLR 295
            D  R
Sbjct: 61  NDCPR 65


>05_04_0162 +
           18645459-18645827,18645934-18646149,18646224-18646278,
           18646545-18646672,18647134-18647217,18648742-18648867,
           18648949-18649086
          Length = 371

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -1

Query: 455 TRPGTGRIRFPSKPDTPRSSEPILIPKLR 369
           TRP TG+   P K D  RS   + I KLR
Sbjct: 108 TRPRTGKAALPLKRDRTRSKRFLEIQKLR 136


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,336,899
Number of Sequences: 37544
Number of extensions: 570662
Number of successful extensions: 2024
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2021
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)