Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0439
(665 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c... 31 0.11
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe... 29 0.60
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 28 1.4
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 26 5.6
SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated |Schizosaccharom... 25 7.4
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce... 25 7.4
SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S... 25 7.4
SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 7.4
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 25 9.8
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2... 25 9.8
>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1142
Score = 31.5 bits (68), Expect = 0.11
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 191 SGCGRCRVWSMFVRYVRFSELDFNIMRPQKLYIF 292
+GCG+ VW +VR+V F E LY++
Sbjct: 108 NGCGKSYVWPSYVRFVDFDERYTRFANKYSLYLY 141
>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 410
Score = 29.1 bits (62), Expect = 0.60
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -1
Query: 374 ARKIRGRPENAGPDPVRNVRRFSRV 300
AR I GRPEN G ++N+ R S+V
Sbjct: 214 ARTIPGRPENGGNCDIKNLSRGSKV 238
>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
Pst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1075
Score = 27.9 bits (59), Expect = 1.4
Identities = 18/56 (32%), Positives = 31/56 (55%)
Frame = -1
Query: 620 GYLKRVIVTPAVYPRLLEFLHVDIQSTGQKSHCVNTRGAIAMLCFN*TVGFPLSVP 453
G+++R+ V YP LLE+L++ + S+ + ++ GA L F T P+S P
Sbjct: 76 GFIERISVILRDYPDLLEYLNIFLPSS--YKYLLSNSGANFTLQFT-TPSGPVSTP 128
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 25.8 bits (54), Expect = 5.6
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = -2
Query: 343 RVRIQSET*DDFRECHIKYIQFLRPHYIKI*LAKTNITHE 224
+V + S+ D +E H+KY+Q + +++ LAK +I E
Sbjct: 1069 QVDLLSKLADQEKEKHLKYLQSSYKNSLEVQLAKLDIVKE 1108
>SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 233
Score = 25.4 bits (53), Expect = 7.4
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -3
Query: 228 TNIDQTRHRPHPLPVQTRHAPV 163
+N+D + PHP P Q PV
Sbjct: 100 SNLDSVKSLPHPWPFQKESRPV 121
>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 25.4 bits (53), Expect = 7.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 116 FPYLHYSID*RLFTLETCCGYGYEPARHL 30
+P+ S+D R+F LE+ GY EP L
Sbjct: 159 YPFDLDSLDKRIFKLESKIGYADEPLSEL 187
>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 25.4 bits (53), Expect = 7.4
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 416 ILYDRRSTVSSELARTRGIRLSN*NKALRWPRGC-*RNVISAQCSECQREE 565
I Y + + E A+ G +L+N AL W GC R+V +E RE+
Sbjct: 335 ISYAQGFMLMREAAKEYGWKLNNAGIALMWRGGCIIRSVFLKDITEAFRED 385
>SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 215
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +3
Query: 438 RSAQNWHGQGESDCLIKTKHCDGPAGVDA 524
R N G+ ++DCLI C G+D+
Sbjct: 25 RGTLNSKGKNDNDCLIMCMRCRKVKGIDS 53
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 25.0 bits (52), Expect = 9.8
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -1
Query: 614 LKRVIVTPAVYPRLLEFLHVDIQSTGQKSHC 522
L + IVT + + RLLE+L D S Q S C
Sbjct: 1789 LTKRIVTLSDHYRLLEYLLKDESSCSQASQC 1819
>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 479
Score = 25.0 bits (52), Expect = 9.8
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = -1
Query: 458 VPVLS*PLNGGRTESCRSRTKRNRHDLTARKIRGRPENAGPDPVRNVRRFS 306
VP+ PL+ T+ T RH T + + N GPD + + +S
Sbjct: 211 VPIFRIPLSDYETDDMDDGTPLQRHVATLNQYQSPIFNLGPDILEDEPSYS 261
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,767,547
Number of Sequences: 5004
Number of extensions: 56572
Number of successful extensions: 141
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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