Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0438
         (636 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu...    27   3.0  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    25   9.1  
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   9.1  

>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
           Cct5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 546

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 9   YILKNNTRLGIDALQTSSGNLRR 77
           ++ +N   LGID LQT S ++R+
Sbjct: 483 HVKENKAYLGIDCLQTGSNDMRK 505


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
           Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -2

Query: 308 LATSFIKFTRHLS*LSSFGSNRPQFLKT-QYVFE 210
           L  SF++FT  +S L +F SN   F ++ Q  FE
Sbjct: 500 LQESFVEFTNDISNLQNFLSNSDPFKRSIQETFE 533


>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 154 LSIH*KNYIIILFVTRFKFSNTYCVFKNCGRLLPK 258
           +S+H  N   ++F  +      YCV  N G++ PK
Sbjct: 23  ISVHNPNPEPVIFKVKTTAPKHYCVRPNSGKIEPK 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,427,010
Number of Sequences: 5004
Number of extensions: 46541
Number of successful extensions: 119
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)