Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0438
         (636 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g18860.2 68416.m02396 transducin family protein / WD-40 repea...    28   4.5  
At3g18860.1 68416.m02395 transducin family protein / WD-40 repea...    28   4.5  

>At3g18860.2 68416.m02396 transducin family protein / WD-40 repeat
           family protein contains seven G-protein beta WD-40
           repeats; similar to phospholipase a-2-activating protein
           SP:P27612 from [Mus musculus]
          Length = 760

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -3

Query: 577 VKKCNGVPPGLERERETLNESVMERDILRRGAEVNVLSDLAHY 449
           +KK       L  +    ++S+ E ++ R GA VN+L D +HY
Sbjct: 505 LKKMTEFNTTLRSDAVNNDKSLTELEVSRVGAIVNILKDTSHY 547


>At3g18860.1 68416.m02395 transducin family protein / WD-40 repeat
           family protein contains seven G-protein beta WD-40
           repeats; similar to phospholipase a-2-activating protein
           SP:P27612 from [Mus musculus]
          Length = 760

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -3

Query: 577 VKKCNGVPPGLERERETLNESVMERDILRRGAEVNVLSDLAHY 449
           +KK       L  +    ++S+ E ++ R GA VN+L D +HY
Sbjct: 505 LKKMTEFNTTLRSDAVNNDKSLTELEVSRVGAIVNILKDTSHY 547


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,165,049
Number of Sequences: 28952
Number of extensions: 223801
Number of successful extensions: 497
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)