Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0437
         (766 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g38560.1 68417.m05459 expressed protein                             29   4.5  
At4g04910.1 68417.m00714 AAA-type ATPase family protein similar ...    29   4.5  
At3g17920.1 68416.m02282 leucine-rich repeat family protein cont...    29   4.5  
At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identica...    29   4.5  
At2g07020.1 68415.m00803 protein kinase family protein contains ...    28   5.9  
At1g48570.1 68414.m05431 zinc finger (Ran-binding) family protei...    28   5.9  

>At4g38560.1 68417.m05459 expressed protein
          Length = 521

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +3

Query: 66  GDIAKGSIYQCWCLRSYSVTWITVVILEL 152
           GDIA GS  Q    +SYS+  +  V+LEL
Sbjct: 360 GDIASGSKLQSLRTKSYSLETLAAVVLEL 388


>At4g04910.1 68417.m00714 AAA-type ATPase family protein similar to
           SP|P18708 Vesicular-fusion protein NSF
           (N-ethylmaleimide-sensitive fusion protein)
           (NEM-sensitive fusion protein) {Cricetulus griseus};
           contains Pfam profiles PF00004: ATPase AAA family,
           PF02359: Cell division protein 48 (CDC48) N-terminal
           domain; contains non-consensus AT-AC splice sites at
           intron 2
          Length = 742

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
 Frame = +1

Query: 202 DQNQSTEGLASE--VVNFDDLDNFCRSHG 282
           +Q+Q T G ASE  V+ FD++D  C+S G
Sbjct: 307 EQDQRTLGDASELHVIIFDEIDAICKSRG 335


>At3g17920.1 68416.m02282 leucine-rich repeat family protein
           contains leucine rich repeat (LRR) domains, Pfam:PF00560
          Length = 962

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -1

Query: 439 RLLPSLDVVAVSQAPSPESNPDSPLPVTTMVVAE 338
           RLLPSL VV+   +P+ +  P S LP + + V E
Sbjct: 84  RLLPSLKVVSSLPSPARDPTPLSLLPFSKLKVLE 117


>At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identical
           to gi_3883128_gb_AAC77827
          Length = 133

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -1

Query: 430 PSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTIES 323
           PS    A + APSP +NP    P T   V++   ES
Sbjct: 39  PSQSPRATAPAPSPSANPPPSAPTTAPPVSQPPTES 74


>At2g07020.1 68415.m00803 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 700

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -3

Query: 269 QKLSRSSKLT-TSDARPSVDWF*SNTSTHPITGQSSD 162
           Q L   S L+  S  RPS+DWF  N S +  +  SS+
Sbjct: 218 QALVSDSDLSFVSSDRPSMDWFEDNRSNYATSSSSSE 254


>At1g48570.1 68414.m05431 zinc finger (Ran-binding) family protein
           contains Pfam domain, PF00641: Zn-finger in Ran binding
           protein and others
          Length = 455

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/63 (23%), Positives = 29/63 (46%)
 Frame = +3

Query: 21  VSKMKRCRSQCKADEGDIAKGSIYQCWCLRSYSVTWITVVILELIHAIRTLTSDGMSACI 200
           V+  KR R+  K +EGD+      +  C R+Y +   T      +  +R L  + + + +
Sbjct: 133 VNSSKRIRAHVKLNEGDVCGSCDLRSSCDRAYVILKDTEADARTVDVMRLLLFNALDSIV 192

Query: 201 RSK 209
            S+
Sbjct: 193 ISR 195


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,265,134
Number of Sequences: 28952
Number of extensions: 339038
Number of successful extensions: 822
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)