Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0432
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi...    30   0.29 
SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc...    29   0.67 
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    29   0.88 
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   2.0  
SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomy...    27   2.7  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    27   2.7  
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S...    27   3.6  
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    27   3.6  
SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr ...    27   3.6  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    26   4.7  
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   6.2  
SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase |Schizosacchar...    26   6.2  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    25   8.2  
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo...    25   8.2  

>SPCC576.13 |swc5||chromatin remodeling complex subunit
           Swc5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 215

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = +2

Query: 26  KSKH--LYEEKKSEVITNVVNKLIRNNKMNCMEYAYQLWLQGSKD 154
           K KH  + + +KS + ++   K+++ NK+N +E A Q W +  K+
Sbjct: 131 KKKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNWSKYIKE 175


>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +2

Query: 317 VSWKLIALWENNKVYFKILNTERNQYLVLGVGTNWNG 427
           + +K I L++NN+   KILN  R    V+ VGT  NG
Sbjct: 254 IFFKCIPLFKNNEEAEKILNVNRLLDRVMFVGTKVNG 290


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -1

Query: 223 VHKLNRVFGEDKSELNWETIPDDVL 149
           +H +     EDKS+L +ETIPD VL
Sbjct: 9   IHPVRHSKYEDKSKLPFETIPDPVL 33


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 138 SRAPRTSSGIVSQLSSDLSSP-KTRLSLCTSATVS 239
           S  P T S + S LSS  SSP  T LS+ +S+T S
Sbjct: 567 SSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSS 601


>SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 482

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = -2

Query: 594 PGHAVTRGLNRPRQCQSLAVFTVVDVEQESLSYLAGCRYHWALKLSTLLTPKAIWSPFQL 415
           PG ++  G   P QC++L +     +   +   +AG   H  L +   L  K I S  +L
Sbjct: 333 PGSSIMPGKVNPTQCEALTMVCAQVMGNHATITVAGASGHCELNVFKPLLAKNILSSIRL 392

Query: 414 V 412
           +
Sbjct: 393 L 393


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +2

Query: 302 KTSPRVSWKLIALWENNKVYFKILNTERNQYLVLGVGTN 418
           K SP+V+WK   +W + K   K +++      +LG G++
Sbjct: 28  KASPKVNWKTHIIWRSLK-NVKCIDSFHGNNEILGAGSS 65


>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
           Prp31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +3

Query: 168 VSQLSSDLSSPKTRLSLCTSATV 236
           VS L +DL + KT+LS   SATV
Sbjct: 166 VSSLLNDLDNSKTKLSFLPSATV 188


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 50  KKSEVITNVVNKLIRNNKMNCMEYAYQLWLQ 142
           K+   +T+  NKL+ ++  +  +YAY L LQ
Sbjct: 35  KREAQLTDTPNKLLTDHDQSASDYAYALKLQ 65


>SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 203

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +1

Query: 559 RTVEPSGHRMAWGYNGRVIGSPEHYAWGIKAF 654
           +T+ P G    +GY   +   P HY + I  F
Sbjct: 2   KTLSPEGSLWVFGYGSLIWHPPPHYDYSIPCF 33


>SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1205

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 495  STTMTLVLHLQP*IQQGFDTVEDG 566
            S  + +V HL   I+Q +D +EDG
Sbjct: 1015 SENVPIVFHLMQRIKQSYDVIEDG 1038


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -2

Query: 279 SAIVALNIMLSVKARPSRLYISLIAFSAKISLNSTG 172
           S IVA    +S+K + ++LY+S+    + + LN TG
Sbjct: 237 SDIVAYENFVSLKRKLTQLYVSIHDLISYVHLNYTG 272


>SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 413

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -1

Query: 508 VIVVLSRLQVPLGSETIDAVDSEGHMVAVPVSA 410
           V+  L  +  P G++T+   D  GH + VP+ +
Sbjct: 195 VVTTLLAVNAPQGTQTLRYDDKSGHEMPVPLGS 227


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1396

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 393  TWYWESALTGTATIWPSESTASIVS 467
            T Y+ +   G ATI PS  TASI+S
Sbjct: 1217 TLYYTTLGIGIATISPSIGTASIIS 1241


>SPBC1683.09c |frp1||ferric-chelate reductase
           Frp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 564

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 21/85 (24%), Positives = 40/85 (47%)
 Frame = -2

Query: 273 IVALNIMLSVKARPSRLYISLIAFSAKISLNSTGKQSRTMSLEPWSQS**AYSMQFILLF 94
           +V   ++L++ A P    IS+     +   +S GKQ+  +S   WS++  A  + F+   
Sbjct: 68  LVTHKVILTLIAVPVVFAISIPFIGMQTPASSHGKQTTQVSTGNWSKNAVAARLGFL--- 124

Query: 93  RISLFTTFVMTSLFFSSYKCLLFST 19
              L+ T    S+  + +  LL S+
Sbjct: 125 ACGLYVTSYFFSIKNNPFALLLISS 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,876,994
Number of Sequences: 5004
Number of extensions: 59738
Number of successful extensions: 212
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)