Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0432
(721 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0022 - 10686901-10687506,10687730-10688680 34 0.13
02_04_0509 - 23554609-23555241,23555371-23556318 31 0.92
02_01_0638 + 4785232-4786155,4786418-4787038 30 2.1
12_02_0397 + 18581301-18581561,18581584-18581676 29 2.8
02_01_0635 + 4765200-4766144,4766392-4767006 29 2.8
01_07_0237 + 42204301-42205200,42205356-42206030 29 2.8
01_01_0866 - 6765761-6766413,6766805-6766906,6767693-6768965 29 2.8
07_01_0622 - 4625246-4627759 29 3.7
02_01_0630 - 4724316-4724945,4725083-4726012 29 3.7
10_02_0128 + 5567202-5568107,5568587-5568968,5570356-5570423,557... 29 4.9
01_06_1698 - 39264075-39264468,39264545-39264696,39264780-392648... 29 4.9
02_01_0634 + 4754175-4755092,4755546-4756172 28 6.5
10_02_0011 + 4148469-4149371,4153358-4153960 28 8.6
02_01_0632 + 4740052-4740969,4742383-4743009 28 8.6
01_07_0235 + 42198662-42199615,42200129-42200746 28 8.6
>06_02_0022 - 10686901-10687506,10687730-10688680
Length = 518
Score = 33.9 bits (74), Expect = 0.13
Identities = 15/50 (30%), Positives = 30/50 (60%)
Frame = +2
Query: 221 YKRDGLALTLSMMFKATMADLYGDGKDKTSPRVSWKLIALWENNKVYFKI 370
+K++G L+ +M + ++DLYG G T+ + W ++ L +N +V K+
Sbjct: 300 WKQEGSLLSHDVM-RVLLSDLYGAGASTTAALIEWGMVDLIQNPEVMTKV 348
>02_04_0509 - 23554609-23555241,23555371-23556318
Length = 526
Score = 31.1 bits (67), Expect = 0.92
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +2
Query: 224 KRDGLALTLSM-MFKATMADLYGDGKDKTSPRVSWKLIALWENNKVYFK 367
K D L + L+ KA + D++G G D +S V W L L N + K
Sbjct: 298 KEDNLDVPLTTGNIKAVLLDIFGAGSDTSSHMVQWVLSELMRNPEAMHK 346
>02_01_0638 + 4785232-4786155,4786418-4787038
Length = 514
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +2
Query: 218 MYKRDGLALTLSM-MFKATMADLYGDGKDKTSPRVSWKLIALWENNKVYFKILN 376
++K L + L+ KA + DL+G G + +S + W + L N +V K N
Sbjct: 288 IHKEGSLEVPLTAGNLKAVILDLFGAGSETSSDALQWAMSELMRNPRVMEKAQN 341
>12_02_0397 + 18581301-18581561,18581584-18581676
Length = 117
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 214 AYVQARRSRFDAEHDVQGDDGRPLRRRQGQD 306
++ A R+ A HD+Q D +PLR G D
Sbjct: 43 SWASASEDRWHAPHDIQWGDNQPLRPSDGGD 73
>02_01_0635 + 4765200-4766144,4766392-4767006
Length = 519
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +2
Query: 224 KRDGLALTLSM-MFKATMADLYGDGKDKTSPRVSWKLIALWENNKVYFK 367
K GL + L+M + K + DL+G G + ++ + W + L N +V K
Sbjct: 297 KEGGLEVPLTMGVIKGVIRDLFGAGSETSANTLQWTMSELVRNPRVMQK 345
>01_07_0237 + 42204301-42205200,42205356-42206030
Length = 524
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +2
Query: 209 IKLMYKRDG-LALTLSM-MFKATMADLYGDGKDKTSPRVSWKLIALWENNKV 358
+ L ++RDG L +TL+ + A + DL+ G + TS + W + L + V
Sbjct: 276 VLLRFQRDGGLGITLTKEIVSAVLFDLFAGGSETTSTTILWAMSELMRSPHV 327
>01_01_0866 - 6765761-6766413,6766805-6766906,6767693-6768965
Length = 675
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = -1
Query: 199 GEDKSELNWETIPDDVLGALEPKLIGVLHAVHLVVSYQFVH 77
GED++ LNWET LGA G+ H +H + +FVH
Sbjct: 462 GEDRTPLNWETRVRIALGAAR----GIAH-IHTENNGKFVH 497
>07_01_0622 - 4625246-4627759
Length = 837
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = -3
Query: 617 PITLPLYPQAMR*PEGSTVLDSVKALLY 534
P+TLPLYPQ+M + ST D +A L+
Sbjct: 398 PVTLPLYPQSME--DASTQSDCEEACLH 423
>02_01_0630 - 4724316-4724945,4725083-4726012
Length = 519
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +2
Query: 224 KRDGLALTLSM-MFKATMADLYGDGKDKTSPRVSWKLIALWENNKV 358
K GL + L+M + KA + DL+ G + ++ + W + L N +V
Sbjct: 292 KGGGLDVPLTMGIIKAVILDLFSAGSETSATTIQWAMSELMRNPRV 337
>10_02_0128 +
5567202-5568107,5568587-5568968,5570356-5570423,
5570899-5571034,5571206-5571283,5571623-5571747
Length = 564
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 257 MFKATMADLYGDGKDKTSPRVSWKLIALWENNKVYFKILNTE 382
+ +A + DL+ G D T+ V W + L +N ++ K L E
Sbjct: 296 LMRALLTDLFVGGSDSTATTVEWAMAELLQNPEI-MKTLQQE 336
>01_06_1698 -
39264075-39264468,39264545-39264696,39264780-39264830,
39264946-39265122,39265256-39265348,39265489-39265555,
39265695-39265768,39266007-39266088,39266182-39266255,
39266354-39266383,39266475-39266534,39267524-39268225
Length = 651
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 217 YVQARRSRFDAEHDVQGDDGRPLRRRQGQDKPESQLEV 330
+V+A R R + E D P RR++G+D E LE+
Sbjct: 220 WVEANRDRLEEESYKFDQDYYPGRRKRGEDYKEDMLEL 257
>02_01_0634 + 4754175-4755092,4755546-4756172
Length = 514
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = +2
Query: 209 IKLMYKRDG-LALTLSM-MFKATMADLYGDGKDKTSPRVSWKLIALWENNKVYFK 367
+ L ++DG L + L+M KA + +L+G G + ++ + W + L N +V K
Sbjct: 282 VLLRVQKDGSLQMPLTMGNIKAVVLELFGAGSETSANTLQWAMTELIMNPRVMLK 336
>10_02_0011 + 4148469-4149371,4153358-4153960
Length = 501
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/52 (25%), Positives = 25/52 (48%)
Frame = +2
Query: 194 FAENAIKLMYKRDGLALTLSMMFKATMADLYGDGKDKTSPRVSWKLIALWEN 349
F E ++L + D +A ++ DL+ G D +S + W ++ L +N
Sbjct: 274 FLEVLLRLGARDDDIAGLDGDTLRSLFIDLFAAGSDTSSSTIEWAMVELLKN 325
>02_01_0632 + 4740052-4740969,4742383-4743009
Length = 514
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +2
Query: 224 KRDGLALTLSM-MFKATMADLYGDGKDKTSPRVSWKLIALWENNKVYFK 367
K L + L+M KA + +L+G G + ++ + W + L N KV K
Sbjct: 288 KEGSLQVPLTMGNIKAVILELFGAGSETSASTLHWAMTELIMNPKVMLK 336
>01_07_0235 + 42198662-42199615,42200129-42200746
Length = 523
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +2
Query: 209 IKLMYKRDG-LALTLSM-MFKATMADLYGDGKDKTSPRVSWKLIAL 340
+ L + RDG L +TL+ + A + DL+ G + TS + W + L
Sbjct: 294 VLLRFHRDGGLGITLTKEIVSAVLFDLFAAGSETTSTTIIWAMSEL 339
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,857,351
Number of Sequences: 37544
Number of extensions: 404467
Number of successful extensions: 1331
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1331
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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