Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0432
         (721 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7524| Best HMM Match : V-ATPase_G (HMM E-Value=3.2)                 30   1.6  
SB_58977| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_58733| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  

>SB_7524| Best HMM Match : V-ATPase_G (HMM E-Value=3.2)
          Length = 492

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +1

Query: 232 RSRFDAEHDVQGDDGRPLRRRQGQDKPESQLEVNR 336
           R +++ EH++    G+P R+++G  KP + L  NR
Sbjct: 21  RRQYEREHNITLPKGKPGRKKKGGTKPGAALRGNR 55


>SB_58977| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 206

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 22/84 (26%), Positives = 40/84 (47%)
 Frame = +1

Query: 124 LSTLAPGLQGHRPGLFPS*VQTYLRRKRD*AYVQARRSRFDAEHDVQGDDGRPLRRRQGQ 303
           ++ LA  ++ + P L  + V    R++R  A         D    +Q D  +  RRR+ Q
Sbjct: 7   VALLARFIEDNEPALVAARVD---RQERSLAQTLRDEQDEDYRRSLQADQEKERRRREEQ 63

Query: 304 DKPESQLEVNRSVGEQQGLLQDLE 375
           +K + + E  R   ++Q +L+ LE
Sbjct: 64  EKKQKEEEAERR--KKQAILEKLE 85


>SB_58733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2060

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -1

Query: 262  EHHAQRQSETVALVHKLNRVFGEDKSELNW-ETIPDDVLGALEPKLIGVLH 113
            + H   +S ++AL  K+ R F    SE+   ET PD VLG L   L+G L+
Sbjct: 1913 DFHKHMRSMSMALF-KIVRSFVRRLSEIEEKETRPDQVLGDLFEALLGALY 1962


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,796,049
Number of Sequences: 59808
Number of extensions: 477231
Number of successful extensions: 1688
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1688
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)