Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0432
(721 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81507-1|CAB04133.1| 485|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z72513-1|CAA96669.1| 260|Caenorhabditis elegans Hypothetical pr... 30 1.4
AF036698-2|AAB88353.1| 485|Caenorhabditis elegans Puf (pumilio/... 30 1.4
U13019-4|AAC24451.1| 222|Caenorhabditis elegans Hypothetical pr... 29 3.3
U13019-3|AAC24452.2| 713|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z77670-1|CAB01247.1| 484|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z75543-5|CAA99872.2| 270|Caenorhabditis elegans Hypothetical pr... 28 5.8
L12018-1|AAA65458.1| 518|Caenorhabditis elegans Polk (dna polym... 28 5.8
Z81097-4|CAB03176.1| 100|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z75529-3|CAA99786.2| 1099|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z34802-2|CAA84334.2| 228|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z19153-3|CAA79547.1| 301|Caenorhabditis elegans Hypothetical pr... 28 7.7
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr... 28 7.7
AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical ... 28 7.7
>Z81507-1|CAB04133.1| 485|Caenorhabditis elegans Hypothetical
protein F18A11.1 protein.
Length = 485
Score = 30.3 bits (65), Expect = 1.4
Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Frame = +2
Query: 62 VITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRDCFPVEFRLIFAENAIKLMYKRDGLA 241
++ V+++L N K+ C ++ QL IVR+C+ + FA I+ + K G+
Sbjct: 257 LVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSN-EFANYVIQYVIKSSGIM 315
Query: 242 LTL--SMMFKATMADLYGDGKDKTSPRV 319
+++ K + +L +DK + V
Sbjct: 316 EMYRDTIIDKCLLRNLLSMSQDKYASHV 343
>Z72513-1|CAA96669.1| 260|Caenorhabditis elegans Hypothetical
protein T04F3.2 protein.
Length = 260
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -1
Query: 646 LYPKRNVRDFRLLCRCIPRPCGDPRAQPSSTVSKPCC 536
LY K D + C C+ G+P+ S+T KP C
Sbjct: 83 LYDKVQCYDVSIYCWCVDELSGEPKLGSSTTRGKPKC 119
>AF036698-2|AAB88353.1| 485|Caenorhabditis elegans Puf
(pumilio/fbf) domain-containingprotein 7 protein.
Length = 485
Score = 30.3 bits (65), Expect = 1.4
Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Frame = +2
Query: 62 VITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRDCFPVEFRLIFAENAIKLMYKRDGLA 241
++ V+++L N K+ C ++ QL IVR+C+ + FA I+ + K G+
Sbjct: 257 LVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSN-EFANYVIQYVIKSSGIM 315
Query: 242 LTL--SMMFKATMADLYGDGKDKTSPRV 319
+++ K + +L +DK + V
Sbjct: 316 EMYRDTIIDKCLLRNLLSMSQDKYASHV 343
>U13019-4|AAC24451.1| 222|Caenorhabditis elegans Hypothetical
protein T12A2.15b protein.
Length = 222
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +2
Query: 290 DGKDKTSPRVSWKLIALWENNKVYFKILNTERN 388
D KD+ +P VS KL+AL N +V+ K T +N
Sbjct: 120 DKKDQCNPYVSVKLVALDGNKEVFKKKTPTAKN 152
>U13019-3|AAC24452.2| 713|Caenorhabditis elegans Hypothetical
protein T12A2.15a protein.
Length = 713
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +2
Query: 290 DGKDKTSPRVSWKLIALWENNKVYFKILNTERN 388
D KD+ +P VS KL+AL N +V+ K T +N
Sbjct: 611 DKKDQCNPYVSVKLVALDGNKEVFKKKTPTAKN 643
>Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical
protein T07D4.4a protein.
Length = 1022
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +3
Query: 132 FGSRAPRTSSGIVSQLSSDL--SSPKTRLSLCTSATVS 239
FG APRT SG + Q S++L S+PKT A++S
Sbjct: 145 FGVLAPRTLSGSIPQTSTNLEDSTPKTSTGGRFGASIS 182
>Z77670-1|CAB01247.1| 484|Caenorhabditis elegans Hypothetical
protein W05E10.1 protein.
Length = 484
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = -2
Query: 687 WFVVETLYYNLESLYT--PSVMFGTSDYSAVVSPGHAVT 577
WFV++T+ N+ESL + M+ + + A+V G+ T
Sbjct: 260 WFVIQTIAVNIESLCSVFTIAMYNWTSHQAIVYGGYIET 298
>Z75543-5|CAA99872.2| 270|Caenorhabditis elegans Hypothetical
protein K01D12.5 protein.
Length = 270
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/53 (26%), Positives = 29/53 (54%)
Frame = -2
Query: 696 HSHWFVVETLYYNLESLYTPSVMFGTSDYSAVVSPGHAVTRGLNRPRQCQSLA 538
+ + T Y N++++ P M+G++ S VVS G++ + G N+ ++A
Sbjct: 83 YPQYLPTHTGYSNIQTVGQPYQMYGSAPGSNVVSGGNSESYGYNQQAPVPTVA 135
>L12018-1|AAA65458.1| 518|Caenorhabditis elegans Polk (dna
polymerase kappa) homologprotein 1 protein.
Length = 518
Score = 28.3 bits (60), Expect = 5.8
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +2
Query: 2 ADYASAVEKSKHLYEEKKSEVITNVVNKLIRNN--KMNCMEYAYQLWLQGSKDIVRDCFP 175
A Y+S +K + EEK E I N + R K + ++ L+ S+D+ RDC
Sbjct: 29 ASYSSFSKKQQSRIEEKVLE-IKNRLQTATREERQKSEILMENLEMKLESSRDLSRDCVC 87
Query: 176 VEFRLIFA 199
++ FA
Sbjct: 88 IDMDAYFA 95
>Z81097-4|CAB03176.1| 100|Caenorhabditis elegans Hypothetical
protein K07A1.6 protein.
Length = 100
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = -1
Query: 592 RPCGDPRAQPSSTVSKPCCIHGCRC 518
+ C PR P S PC + CRC
Sbjct: 53 KSCTHPRQPPFSQCKLPCIPYSCRC 77
>Z75529-3|CAA99786.2| 1099|Caenorhabditis elegans Hypothetical
protein C44H9.4 protein.
Length = 1099
Score = 27.9 bits (59), Expect = 7.7
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +2
Query: 353 KVYFKILNTERNQYLVLGVGTNWNGDH 433
+ YF++L+ E N+Y+++ N +G H
Sbjct: 156 RAYFRVLSAEDNKYILIACHANLHGLH 182
>Z34802-2|CAA84334.2| 228|Caenorhabditis elegans Hypothetical
protein M88.2 protein.
Length = 228
Score = 27.9 bits (59), Expect = 7.7
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Frame = +2
Query: 341 WENNKVYFKILNTE--RNQYLVLG-VGTNW--NGDHMAFGVNSVDSFRAQWYLQPAKYDN 505
W NN Y KIL E +++L G V W G ++ S D R+ W L K+
Sbjct: 46 WPNNPSYMKILRAEPGMDRWLFEGKVYAEWVFRGKNLGVYEFSKDLNRSDWQL-VHKHQE 104
Query: 506 DSCSTSTT 529
S ++STT
Sbjct: 105 KSYTSSTT 112
>Z19153-3|CAA79547.1| 301|Caenorhabditis elegans Hypothetical
protein C38C10.3 protein.
Length = 301
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +3
Query: 144 APRTSSGIVSQLSSDLSSPKTRLSLCTSATVS 239
A + SSG+VSQ+SS SS + R +L ++ S
Sbjct: 91 AVKNSSGLVSQISSTTSSERKRRTLARPSSSS 122
>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
presynaptic morphologyprotein 1 protein.
Length = 3766
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -2
Query: 657 LESLYTPSVMFGTSDYSAVVSPGHAVTRGLNRPRQC 550
L+++ S+ G S AV GH T GLN QC
Sbjct: 610 LDNVMISSLALGKSHGVAVTRNGHLFTWGLNNMNQC 645
>AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical
protein F07B7.12 protein.
Length = 1900
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -2
Query: 657 LESLYTPSVMFGTSDYSAVVSPGHAVTRGLNRPRQC 550
L+++ S+ G S AV GH T GLN QC
Sbjct: 610 LDNVMISSLALGKSHGVAVTRNGHLFTWGLNNMNQC 645
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,868,412
Number of Sequences: 27780
Number of extensions: 340183
Number of successful extensions: 1122
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1122
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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