Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0432
         (721 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   2.9  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   5.1  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    22   5.1  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   6.7  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   8.9  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   8.9  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   8.9  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   8.9  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +2

Query: 332 IALWEN--NKVYFKILNTERNQYLVLGVGTNWNGDHMAFGVNSVDS 463
           IA W +  N++    L+TE+    +    T W   HM+   +++DS
Sbjct: 177 IASWSHGSNEIKLNSLDTEQILDDMYNNNTEWEIVHMSHSESTIDS 222


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 5/18 (27%), Positives = 13/18 (72%)
 Frame = -2

Query: 720 FINSFIAAHSHWFVVETL 667
           F+  F+  +S+WF+++ +
Sbjct: 226 FVPLFLIIYSYWFIIQAV 243


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 5/18 (27%), Positives = 13/18 (72%)
 Frame = -2

Query: 720 FINSFIAAHSHWFVVETL 667
           F+  F+  +S+WF+++ +
Sbjct: 102 FVPLFLIIYSYWFIIQAV 119


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 46  GEEERSHHKCREQTDTKQQDELHGV 120
           GE   S  + RE    ++ D+LH V
Sbjct: 249 GERSCSRDRSREYKKDRRYDQLHNV 273


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -1

Query: 487 LQVPLGSETIDAVDSEGHMVAVPVSADSQYQVLVT 383
           L+ P+G+E+   V S G  +   +  D + Q+L+T
Sbjct: 38  LERPVGNESEPLVLSFGLTLMQIIDVDEKNQLLIT 72


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 49  EEERSHHKCREQTDTKQQDELH 114
           +EER   K R+Q++ +    LH
Sbjct: 181 QEERQRTKERDQSEVESTSSLH 202


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 49  EEERSHHKCREQTDTKQQDELH 114
           +EER   K R+Q++ +    LH
Sbjct: 181 QEERQRTKERDQSEVESTSSLH 202


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 453 ASIVSEPSGTCSLLSTTMTLVLH 521
           AS+ +EP  T +  ++T T +LH
Sbjct: 170 ASVKAEPGSTGTTTTSTGTRLLH 192


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,864
Number of Sequences: 438
Number of extensions: 4570
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)