Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0432
         (721 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g03800.1 68418.m00347 exostosin family protein / pentatricope...    31   0.77 
At1g76730.1 68414.m08930 5-formyltetrahydrofolate cyclo-ligase f...    31   1.0  
At1g68150.1 68414.m07785 WRKY family transcription factor simila...    29   2.3  
At5g63450.1 68418.m07965 cytochrome P450, putative                     28   7.2  
At5g56690.1 68418.m07076 F-box family protein contains F-box dom...    27   9.5  
At4g00730.1 68417.m00099 anthocyaninless2 (ANL2) nearly identica...    27   9.5  
At3g48520.1 68416.m05296 cytochrome P450 family protein similar ...    27   9.5  

>At5g03800.1 68418.m00347 exostosin family protein /
           pentatricopeptide (PPR) repeat-containing protein
           contains Pfam profiles: PF03016 exostosin family,
           PF01535 PPR repeat
          Length = 1388

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 22/66 (33%), Positives = 34/66 (51%)
 Frame = -2

Query: 405 PNTKYWLRSVFKILK*TLLFSHRAINFQLTLGLVLSLPSP*RSAIVALNIMLSVKARPSR 226
           PNT+Y L+ V + +K + LF H A    +T G +LS  +  +   V  N+ML        
Sbjct: 806 PNTEYVLQEVDEFMKKSFLFHHSA-KLAVTYG-ILSSNTRGKPVRVMKNVMLCGDCHEFF 863

Query: 225 LYISLI 208
            YIS++
Sbjct: 864 KYISVV 869


>At1g76730.1 68414.m08930 5-formyltetrahydrofolate cyclo-ligase
           family protein contains Pfam profile PF01812
           5-formyltetrahydrofolate cyclo-ligase
          Length = 354

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 147 PRTSSGIVSQLSSDLSSPKTRLSLCTSATVS 239
           PR  +G  S L SDL  P+T +  CTS  V+
Sbjct: 171 PRLRTGFFSVLESDLLKPETIMEACTSVGVA 201


>At1g68150.1 68414.m07785 WRKY family transcription factor similar
           to DNA-binding protein ABF2 GI:1159879 from [Avena
           fatua]
          Length = 374

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +1

Query: 226 ARRSRFDAEHDVQGDDGRPLRRRQGQDKPESQLEVNRSVGEQQGLLQ 366
           +R ++ D EHD  GD+   + +    D     L       E++ LLQ
Sbjct: 50  SRENKEDEEHDASGDEDEQMVKEDEDDSSSLGLRTREEENEREELLQ 96


>At5g63450.1 68418.m07965 cytochrome P450, putative
          Length = 510

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +2

Query: 293 GKDKTSPRVSWKLIALWENNKVYFKILNTERNQYLVLGVG 412
           G+D TS  ++W    L +N+ V  KIL+  RN+   LG+G
Sbjct: 306 GRDTTSAAMTWLFWLLSQNDDVETKILDELRNKG-SLGLG 344


>At5g56690.1 68418.m07076 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 402

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +2

Query: 347 NNKVYFKILNTERNQYLVLGVGTNWNGDHMAFGVNSVDSFRAQWYLQPAKYDNDSCS 517
           N+K ++K    +  +YL +    N       F +NS+++FR +WY    + D D  S
Sbjct: 333 NSKSFYK---EKIGEYLPVSWSKNQGSVPKCF-LNSLETFRVKWYYSEEQEDRDFLS 385


>At4g00730.1 68417.m00099 anthocyaninless2 (ANL2) nearly identical
           to Anthocyaninless2 [Arabidopsis thaliana] GI:5702094
          Length = 802

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = +2

Query: 374 NTERNQYLVLGVGTNWNGDHMAF 442
           N   N  L L VGTN NG H AF
Sbjct: 270 NHHYNSSLELAVGTNNNGGHFAF 292


>At3g48520.1 68416.m05296 cytochrome P450 family protein similar to
           Cytochrome P450 94A1  (P450-dependent fatty acid
           omega-hydroxylase) (SP:O81117) {Vicia sativa}; contains
           Pfam profile: PF00067 cytochrome P450
          Length = 506

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +2

Query: 293 GKDKTSPRVSWKLIALWENNKVYFKILNTERNQYLVLGVG 412
           G+D TS  ++W    L EN+ V  KIL  E +  + LG+G
Sbjct: 304 GRDTTSAAMTWLFWLLTENDDVERKILE-EVDPLVSLGLG 342


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,095,826
Number of Sequences: 28952
Number of extensions: 319688
Number of successful extensions: 1089
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)