Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0431
         (670 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF657695-11|ABR99002.1|  603|Homo sapiens NADH dehydrogenase sub...    32   2.1  
EF657242-11|ABR93124.1|  603|Homo sapiens NADH dehydrogenase sub...    32   2.1  
AY738943-11|AAU13001.1|  603|Homo sapiens NADH dehydrogenase sub...    31   4.9  
DQ200801-11|ABA07970.1|  603|Homo sapiens NADH dehydrogenase sub...    30   8.6  

>EF657695-11|ABR99002.1|  603|Homo sapiens NADH dehydrogenase
           subunit 5 protein.
          Length = 603

 Score = 31.9 bits (69), Expect = 2.1
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +2

Query: 2   PFLSGFYSKDLILEMVSFNSFNLIVLF 82
           PFL+GFYSKD I+E  + +  N   LF
Sbjct: 384 PFLTGFYSKDHIIEAANMSYTNAWALF 410


>EF657242-11|ABR93124.1|  603|Homo sapiens NADH dehydrogenase
           subunit 5 protein.
          Length = 603

 Score = 31.9 bits (69), Expect = 2.1
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +2

Query: 2   PFLSGFYSKDLILEMVSFNSFNLIVLF 82
           PFL+GFYSKD I+E  + +  N   LF
Sbjct: 384 PFLTGFYSKDHIIEAANMSYTNAWALF 410


>AY738943-11|AAU13001.1|  603|Homo sapiens NADH dehydrogenase
           subunit 5 protein.
          Length = 603

 Score = 30.7 bits (66), Expect = 4.9
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +2

Query: 2   PFLSGFYSKDLILEMVSFNSFN 67
           PFL+GFYSKD I+E  S +  N
Sbjct: 384 PFLTGFYSKDHIIETASMSYTN 405


>DQ200801-11|ABA07970.1|  603|Homo sapiens NADH dehydrogenase
           subunit 5 protein.
          Length = 603

 Score = 29.9 bits (64), Expect = 8.6
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +2

Query: 2   PFLSGFYSKDLILEMVSFNSFN 67
           PFL+GFYSKD I+E  + +  N
Sbjct: 384 PFLTGFYSKDHIIETANMSHTN 405


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,337,148
Number of Sequences: 237096
Number of extensions: 546416
Number of successful extensions: 4373
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4373
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7591280850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)