Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0431
         (670 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81030-13|CAB02705.2|  358|Caenorhabditis elegans Hypothetical p...    28   5.2  
Z77665-1|CAB01220.1|  339|Caenorhabditis elegans Hypothetical pr...    28   6.9  
AC006776-7|AAF60623.1|  361|Caenorhabditis elegans Serpentine re...    28   6.9  

>Z81030-13|CAB02705.2|  358|Caenorhabditis elegans Hypothetical
           protein C01G10.3 protein.
          Length = 358

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 139 VIINDFNLIIIYNLYDEDYIMLNRIFVLLF 228
           +II   NL++ YN +   Y+ +NR F +LF
Sbjct: 97  IIIFGMNLLV-YNEFQSVYLSINRFFAMLF 125


>Z77665-1|CAB01220.1|  339|Caenorhabditis elegans Hypothetical
           protein K02E11.2 protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
 Frame = +1

Query: 67  FDSFILFYLS----TGLTVFYTFRLIIYVIINDFNLIIIYNLYDEDYI--MLNRIFVLLF 228
           FDS + F ++    + L   Y F L+I++    FNL  ++  Y   Y   ML+R  V+++
Sbjct: 29  FDSLLKFEIAVLAFSWLEFLYVFYLLIFIRAMHFNLTFLFINYGGQYFGSMLSRC-VIIY 87

Query: 229 IRL 237
           ++L
Sbjct: 88  MQL 90


>AC006776-7|AAF60623.1|  361|Caenorhabditis elegans Serpentine
           receptor, class w protein100 protein.
          Length = 361

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +1

Query: 79  ILFYLSTGLTVFYTFRLII 135
           ILF+LS  L+VFY FR ++
Sbjct: 151 ILFFLSALLSVFYQFRFVV 169


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,455,578
Number of Sequences: 27780
Number of extensions: 90569
Number of successful extensions: 292
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)