Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0431
         (670 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    24   1.5  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   4.6  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 73  SFILFYLSTGLTVFYTFRLIIYVIINDFNLIIIYNLYDEDYIML 204
           SFI   L   L   Y    I  V +N+ NLI++ N+ D  +I +
Sbjct: 53  SFIRIVLVILLRAGYVLIHIGSVPVNNINLILLQNIIDICWITM 96


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/35 (25%), Positives = 21/35 (60%)
 Frame = -1

Query: 268 KINQLKNYHLIIL*IIKQIFYLT*YNLHHINYKLL 164
           ++N+  N +++ L +  Q F    YN + +N+++L
Sbjct: 536 RMNRQMNEYMMALSMKLQKFINNDYNFNEVNFRIL 570


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,661
Number of Sequences: 438
Number of extensions: 1575
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)