Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0430
         (836 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha...    31   0.27 
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    29   0.62 
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    29   0.82 
SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr 3...    26   5.8  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    26   7.6  
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   7.6  

>SPAPJ696.02 |||actin cortical patch component Lsb4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 23/90 (25%), Positives = 42/90 (46%)
 Frame = -2

Query: 667 SSELTVERRSYRIVPIAHETKPTRLTARKIRGRPENAGPDPVRNVRRFSRVSYKYIQFLR 488
           SS+++ E  S      +  +KP+R TA K + + ++ GP+  R +  F+      + F +
Sbjct: 335 SSDVSTESSSQFSSRSSEYSKPSRPTAPKPKFKQDSLGPNQARAMYSFAGEQPGDLSFQK 394

Query: 487 PHYIKILTR*NEHNARTSTRPGTGRIRFPS 398
              I I+ R   H+   + R G     FP+
Sbjct: 395 GDIIDIVERSGSHDDWWTGRIGYREGIFPA 424


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 29.5 bits (63), Expect = 0.62
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 406 SGCGRCRVWSMFVRYVRFSELVF*YNAASKTVYIY 510
           +GCG+  VW  +VR+V F E    + A   ++Y+Y
Sbjct: 108 NGCGKSYVWPSYVRFVDFDERYTRF-ANKYSLYLY 141


>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 29.1 bits (62), Expect = 0.82
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -2

Query: 589 ARKIRGRPENAGPDPVRNVRRFSRV 515
           AR I GRPEN G   ++N+ R S+V
Sbjct: 214 ARTIPGRPENGGNCDIKNLSRGSKV 238


>SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 555

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 289 LETCCGYGYEPADISTYIPHLNFQGPQ 209
           LE+C G     AD++    HL F GPQ
Sbjct: 137 LESCIGGAKALADLTGSKAHLRFTGPQ 163


>SPCC1183.07 |||U3 snoRNP-associated protein
           Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1690

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -2

Query: 601 TRLTARKIRGRPENAGPDPVRNVRRFSRVSYKYIQFL 491
           +RL+ +K+ G   N+GP  V +      ++Y Y+  L
Sbjct: 431 SRLSDKKVAGISPNSGPYKVDSTHEARIINYSYVDNL 467


>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = -1

Query: 185 MRCSSRSEPYLPSI-GFHGTRTLRQKRKLFPDLSAASSGHFGLPRRT 48
           MR +   E Y+  + G H   T  Q   LF D     + H  L RRT
Sbjct: 1   MRPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRT 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,511,176
Number of Sequences: 5004
Number of extensions: 75259
Number of successful extensions: 219
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)