Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0430
(836 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0630 - 20097672-20097772,20097983-20102012 32 0.65
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309... 31 1.1
02_02_0346 - 9214365-9214583,9214830-9214919,9215012-9215177,921... 31 1.1
10_08_0313 - 16677849-16679060,16679158-16679244,16679749-16680111 31 1.5
06_01_0350 + 2534422-2535615 31 1.5
02_03_0026 - 14045653-14045874,14047023-14047215,14047518-140476... 31 1.5
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729... 29 3.5
05_06_0098 + 25560158-25560925 29 4.6
02_03_0053 - 14475106-14475126,14475171-14475512,14475969-144760... 29 4.6
12_02_0061 - 13063434-13063525,13063679-13064566,13064912-130649... 29 6.1
06_01_0268 + 1989069-1989293,1989938-1990020,1990136-1990357,199... 29 6.1
04_03_0732 + 19095320-19095827,19095848-19096621,19096863-190969... 29 6.1
12_02_0407 - 18654134-18654172,18654913-18655803 28 8.0
12_01_0655 + 5546293-5546478,5546760-5546877,5550697-5550776,555... 28 8.0
07_03_0078 - 13147741-13148913 28 8.0
04_04_0433 + 25163111-25163471,25163943-25164154,25164420-251647... 28 8.0
02_04_0628 + 24589313-24589472,24589604-24589765,24589850-245899... 28 8.0
>07_03_0630 - 20097672-20097772,20097983-20102012
Length = 1376
Score = 31.9 bits (69), Expect = 0.65
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 1/92 (1%)
Frame = -1
Query: 335 RLPLPTLFYRLEALHLGDLLRIWVRTGRHLHVHPSPEFSRSAESIRTPPQMRCS-SRSEP 159
+L +P + E LH D+ + W + + HP E S E IR P + R+
Sbjct: 202 KLHVPHKGWITETLHKIDMSK-WTQQAIEVSPHPENEKSNKVEYIRHPHDSAVTYLRNPA 260
Query: 158 YLPSIGFHGTRTLRQKRKLFPDLSAASSGHFG 63
+P +G G + +F D + HFG
Sbjct: 261 VIPIVGISGVGKSALAKFIFDDANVRE--HFG 290
>03_04_0090 +
17228253-17228403,17229062-17229129,17229238-17230902,
17231002-17231143,17231648-17232399
Length = 925
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
Frame = -1
Query: 443 TNIDQTRH------RPHPLPVQTRHAPVLRANP 363
T IDQ H + H +PVQ H+PVL+ NP
Sbjct: 324 TQIDQPSHCQRIKNQDHSVPVQKNHSPVLKTNP 356
>02_02_0346 -
9214365-9214583,9214830-9214919,9215012-9215177,
9215601-9215911,9215944-9216566,9216779-9216968,
9217096-9217197,9217285-9217425,9217815-9218411,
9219126-9219286,9220709-9220824,9221538-9221654,
9221746-9221808,9221879-9221949
Length = 988
Score = 31.1 bits (67), Expect = 1.1
Identities = 27/79 (34%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
Frame = -1
Query: 236 PSPEFSRSA-ESIRTPPQM------RCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAAS 78
P P+ SRS ES R P S + + GFHG L+ KL PDL +
Sbjct: 168 PPPKRSRSKQESSRASPMKLIKLYPHMSGEQKRLIEGAGFHGLVDLKCS-KLRPDLCSWL 226
Query: 77 SGHFGLPRRTLVFKDEGTI 21
HF LVF G I
Sbjct: 227 MEHFNPATNQLVFPGRGAI 245
>10_08_0313 - 16677849-16679060,16679158-16679244,16679749-16680111
Length = 553
Score = 30.7 bits (66), Expect = 1.5
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Frame = -1
Query: 293 HLGDLLRIWVRTGRHLHVHPSPEFSRSAESIRTPPQMRCSSRSEPYLPSIGFHGTRT-LR 117
HL +++ + RH V SP R+ + RT P R + R PSI +RT +
Sbjct: 240 HLANVVNQGLTQTRHTSVRVSPSVGRTVSATRTTPATR-AGRGMSNAPSIQIPQSRTRFK 298
Query: 116 QKRKLFPDLSAASSGHFG 63
+ P + + FG
Sbjct: 299 RVGATSPGIVTLNDNQFG 316
>06_01_0350 + 2534422-2535615
Length = 397
Score = 30.7 bits (66), Expect = 1.5
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -3
Query: 138 PWNSNAQAEKKTLPGPLGGVFRP 70
PW S+A+ E+K LP PL +F P
Sbjct: 42 PWRSSARLERKLLPPPLPWLFLP 64
>02_03_0026 - 14045653-14045874,14047023-14047215,14047518-14047618,
14050145-14050272,14050409-14050502,14050749-14051237,
14052622-14052915,14053602-14053732,14053829-14055440,
14055539-14055651,14055902-14056933,14057023-14057145,
14057250-14057688
Length = 1656
Score = 30.7 bits (66), Expect = 1.5
Identities = 21/61 (34%), Positives = 32/61 (52%)
Frame = -3
Query: 261 NRPTSPRTSLT*IFKVRREYPDTAANAVLFAFRTISPFYRIPWNSNAQAEKKTLPGPLGG 82
NRP+S RT+LT FK+ + P+ A +L ++ YR N ++KT G +G
Sbjct: 907 NRPSSSRTTLTEYFKMNQVDPE--ARKLL--YKEFPEHYRWIIGQNVWQKRKTQRGQVGR 962
Query: 81 V 79
V
Sbjct: 963 V 963
>12_01_0796 +
7292523-7292783,7292963-7293018,7295274-7295331,
7295777-7295843,7296461-7296516,7296638-7296691,
7296836-7296961
Length = 225
Score = 29.5 bits (63), Expect = 3.5
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 413 HPLPVQTRHAPVLRANPYSEVTDPICRLPL 324
H L + RH P L+A P S + C+LPL
Sbjct: 107 HSLIIPKRHFPSLQATPPSVIAAICCKLPL 136
>05_06_0098 + 25560158-25560925
Length = 255
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -1
Query: 422 HRPHPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLE 300
HRP P P + P L +P + V I P PT F + +
Sbjct: 31 HRPPPPPPSSSSQPALPPSPRTVVPRTIDTTPFPTTFVQAD 71
>02_03_0053 -
14475106-14475126,14475171-14475512,14475969-14476099,
14476198-14477230,14477495-14477702,14477761-14477807,
14477906-14477971,14478644-14478804,14478985-14479118,
14479244-14479452
Length = 783
Score = 29.1 bits (62), Expect = 4.6
Identities = 20/61 (32%), Positives = 31/61 (50%)
Frame = -3
Query: 261 NRPTSPRTSLT*IFKVRREYPDTAANAVLFAFRTISPFYRIPWNSNAQAEKKTLPGPLGG 82
NRP+S RT+LT FK+ + P+ A +L ++ YR N ++K G +G
Sbjct: 420 NRPSSTRTTLTEYFKMNQVDPE--ARKLL--YKEFPELYRWITGQNVWQKRKMKRGQVGR 475
Query: 81 V 79
V
Sbjct: 476 V 476
>12_02_0061 -
13063434-13063525,13063679-13064566,13064912-13064960,
13065059-13065330,13065422-13065797
Length = 558
Score = 28.7 bits (61), Expect = 6.1
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = -3
Query: 261 NRPTSPRTSLT*IFKVRREYPDTAANAVLFAFRTISPFYRIPWNSNAQAEKKTLPGPLGG 82
NRP+S RT+LT FK+ + P ++ YR N ++KT G +G
Sbjct: 439 NRPSSTRTTLTEYFKMNQVDPKERK----LLYKEFPEHYRWITGQNVWQKRKTKRGQVGR 494
Query: 81 V 79
V
Sbjct: 495 V 495
>06_01_0268 +
1989069-1989293,1989938-1990020,1990136-1990357,
1990434-1990621,1990711-1990835,1990988-1991039,
1991585-1991874,1992229-1992307,1992527-1992657
Length = 464
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -1
Query: 407 LPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEAL 294
+P Q + A + A+P + V C LP P+LF L L
Sbjct: 292 IPYQFQEATSILASPLAHVPASSCPLPAPSLFSSLPLL 329
>04_03_0732 +
19095320-19095827,19095848-19096621,19096863-19096906,
19097191-19097250
Length = 461
Score = 28.7 bits (61), Expect = 6.1
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1
Query: 419 RPHPLPVQTRHAPVLRANPYSEVTDP 342
RP+PL V +RHA VL + V DP
Sbjct: 133 RPNPLDVVSRHAGVLSRGDHCLVVDP 158
>12_02_0407 - 18654134-18654172,18654913-18655803
Length = 309
Score = 28.3 bits (60), Expect = 8.0
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +1
Query: 1 GSGTVSIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFCLSVRVPWNPIEGRY 159
G+G ++++ PS+ +T P+ P R + CLS ++PI GRY
Sbjct: 117 GTGRLTLVNPSTGETLAVPPPPRLPPKRRHRRAPLVVSCLS--FGYHPITGRY 167
>12_01_0655 +
5546293-5546478,5546760-5546877,5550697-5550776,
5551329-5552345,5552523-5553344,5553528-5553800
Length = 831
Score = 28.3 bits (60), Expect = 8.0
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +1
Query: 634 CTTAVQRSAQNWHGQGESDCLIKTKHCDGPRGC*RNVISAQCSNV 768
C T RS N H + CL+ +H G NVI +CS +
Sbjct: 242 CDTERARSDTNEHNIYDGCCLLDVQHTQSFPGNGANVIPTKCSTL 286
>07_03_0078 - 13147741-13148913
Length = 390
Score = 28.3 bits (60), Expect = 8.0
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +3
Query: 549 SGPAFSGLPRIFLAVSRVGFVSCAI 623
SGP + G R+F+A+S +G ++ ++
Sbjct: 223 SGPIYKGRERVFIAISDIGMLAVSL 247
>04_04_0433 +
25163111-25163471,25163943-25164154,25164420-25164701,
25164794-25164916,25165511-25165664,25165754-25165965,
25166143-25166212,25166294-25166424
Length = 514
Score = 28.3 bits (60), Expect = 8.0
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +1
Query: 634 CTTAVQRSAQNWHGQGESDCLIKTKHCDGPRGC-*RNVISAQCSN 765
CT++ +R A W G G L HC P V+S +CS+
Sbjct: 26 CTSSSRRRASPWGGAGRLIRLRLRGHCPSPASARAARVVSPRCSS 70
>02_04_0628 +
24589313-24589472,24589604-24589765,24589850-24589983,
24590108-24590275,24590481-24590562,24590734-24591512
Length = 494
Score = 28.3 bits (60), Expect = 8.0
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = -1
Query: 398 QTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALHLGDLLRIWVRTGR 252
+ RH P++ + EV+ + L L Y ++ L + +LL +W R
Sbjct: 100 ELRHIPIIMMSNRDEVSVVVKCLRLGAAEYLVKPLRMNELLNLWTHVWR 148
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,602,803
Number of Sequences: 37544
Number of extensions: 566153
Number of successful extensions: 1903
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1902
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -