Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0423
         (751 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59480| Best HMM Match : ZU5 (HMM E-Value=2.4e-38)                   29   3.0  
SB_49771| Best HMM Match : Peptidase_M14 (HMM E-Value=1.1e-34)         29   5.3  
SB_51224| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  
SB_27152| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  

>SB_59480| Best HMM Match : ZU5 (HMM E-Value=2.4e-38)
          Length = 903

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = -1

Query: 325 ILGDFSVVIDNCFCSSVILDLSVVF 251
           +LG+   + D C+C S+++ LS++F
Sbjct: 136 VLGESYSIFDGCYCCSLLVILSIIF 160


>SB_49771| Best HMM Match : Peptidase_M14 (HMM E-Value=1.1e-34)
          Length = 635

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 626 LTLLVLISFL*INFQLWVLKSKRSVKKIFER 534
           +T+LV++    I F LW  K +R VKK  +R
Sbjct: 557 ITVLVVVVLCLICFGLWKFKRRRKVKKALKR 587


>SB_51224| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 808

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/36 (33%), Positives = 24/36 (66%)
 Frame = +3

Query: 252 NTTERSRITELQKQLSITTEKSPSIKSKTKLIRSQI 359
           +T ++S+I+ELQ QLS  T ++   K + + ++ Q+
Sbjct: 665 STKQQSKISELQSQLSAITRENEINKRQLETMKQQL 700


>SB_27152| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 160

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +1

Query: 16  SHRPDSPTNSSPRCRTIRISSARSPEPRLARVSVTK 123
           S  PD PT+S  R    ++SS  S +PR   VS T+
Sbjct: 11  STAPDKPTSSPERVVEEQVSSEISQQPRRLSVSSTE 46


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,809,104
Number of Sequences: 59808
Number of extensions: 303353
Number of successful extensions: 712
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)