Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0423
         (751 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g43680.2 68415.m05430 calmodulin-binding family protein simil...    29   3.3  
At2g43680.1 68415.m05429 calmodulin-binding family protein simil...    29   3.3  
At1g35880.1 68414.m04457 hypothetical protein                          28   5.8  

>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 669

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +1

Query: 22  RPDSPTNSSPRCRTIRISSARSPEPR 99
           RP SP  +SPR  + R++S R P PR
Sbjct: 95  RPASPRVASPRPTSPRVASPRVPSPR 120


>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 668

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +1

Query: 22  RPDSPTNSSPRCRTIRISSARSPEPR 99
           RP SP  +SPR  + R++S R P PR
Sbjct: 94  RPASPRVASPRPTSPRVASPRVPSPR 119


>At1g35880.1 68414.m04457 hypothetical protein
          Length = 222

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +1

Query: 1   SRYLISHRPDSPTNSSPRCRTIRISSAR 84
           S YL SHR  +P +SSP+   I  SS R
Sbjct: 54  SSYLSSHRQYNPLSSSPKLHFIASSSPR 81


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,695,845
Number of Sequences: 28952
Number of extensions: 213770
Number of successful extensions: 533
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)