Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0422
         (430 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15006| Best HMM Match : Stig1 (HMM E-Value=2)                       29   1.6  
SB_48709| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_3979| Best HMM Match : Syndecan (HMM E-Value=0.0017)                27   6.6  

>SB_15006| Best HMM Match : Stig1 (HMM E-Value=2)
          Length = 991

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 326  RQCLVFFVLLVCERQRRGQESQSCETV 246
            RQCL FF   +CE  +  Q+  +C T+
Sbjct: 920  RQCLQFFDKDLCENDKEAQDYTACTTI 946


>SB_48709| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 931

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 280 RCRSQTRSTKKTRH*RIDYRHLAEHLNSSCTCSLGHV 390
           +CRS  R+ +KTR  +  Y H+   L S+      H+
Sbjct: 411 QCRSFVRAAEKTREKKTIYEHVKFRLKSARNMPTAHI 447


>SB_3979| Best HMM Match : Syndecan (HMM E-Value=0.0017)
          Length = 436

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -3

Query: 326 RQCLVFFVLLVCERQRRGQESQSCETVVNNNGK 228
           R   VFFVLL+C+   + ++     T +++NG+
Sbjct: 6   RLLFVFFVLLLCDIATKAEDGLREVTTIDDNGQ 38


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,528,197
Number of Sequences: 59808
Number of extensions: 176960
Number of successful extensions: 400
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 826502419
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)