Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0422
         (430 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g07220.1 68418.m00823 BAG domain-containing protein contains ...    27   4.1  
At2g02090.1 68415.m00145 SNF2 domain-containing protein / helica...    27   4.1  

>At5g07220.1 68418.m00823 BAG domain-containing protein contains
           Pfam:PF02179 BAG domain
          Length = 303

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -3

Query: 290 ERQRRGQESQSCETVVNNNGKVTKYKVEN*TNKISNKIKFLYAIFSD 150
           E  R   +  + ETV+N  GKV +  + N    + N++  L AI +D
Sbjct: 145 EVDRLAGQVSAFETVINKGGKVEEKSLVNLIEMLMNQLLRLDAIIAD 191


>At2g02090.1 68415.m00145 SNF2 domain-containing protein / helicase
           domain-containing protein similar to transcriptional
           activator SRCAP [Homo sapiens] GI:5106572; contains Pfam
           profiles PF00271: Helicase conserved C-terminal domain,
           PF00176: SNF2 family N-terminal domain
          Length = 763

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 274 VKNHRAAKQLSITTEKSPSIKSKTKLIRSQIKLNFYTQFSAI 149
           ++ +RAA Q  +    S S+ S  K +  +   N++TQF  I
Sbjct: 472 IEEYRAASQARLVKLSSKSLNSLAKALPKRQISNYFTQFRKI 513


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,425,314
Number of Sequences: 28952
Number of extensions: 124076
Number of successful extensions: 308
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 308
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 675111616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)