Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0420
(696 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g28990.1 68415.m03526 leucine-rich repeat protein kinase, put... 30 1.3
At1g50260.1 68414.m05635 C2 domain-containing protein low simila... 30 1.3
At1g76965.1 68414.m08961 glycine-rich protein 29 2.2
At5g57840.1 68418.m07233 transferase family protein similar to a... 29 2.9
At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identic... 29 2.9
At2g02800.2 68415.m00225 protein kinase (APK2b) identical to pro... 29 2.9
At2g02800.1 68415.m00224 protein kinase (APK2b) identical to pro... 29 2.9
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 29 2.9
At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to ... 29 3.9
At5g42370.1 68418.m05159 expressed protein 29 3.9
At2g03890.2 68415.m00352 phosphatidylinositol 3- and 4-kinase fa... 29 3.9
At2g03890.1 68415.m00351 phosphatidylinositol 3- and 4-kinase fa... 29 3.9
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 28 5.1
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox... 28 5.1
At1g10910.1 68414.m01253 pentatricopeptide (PPR) repeat-containi... 28 5.1
At3g29765.1 68416.m03762 hAT dimerisation domain-containing prot... 28 6.8
At5g22390.1 68418.m02612 expressed protein 27 9.0
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical... 27 9.0
>At2g28990.1 68415.m03526 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 884
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2
Query: 530 TFRTGSGPAFSGLPRIFLAVKSCRFRFVRDRHDSVRPPFNGQLRT 664
T+ T SG R++L+ R+ D HD + PFNG T
Sbjct: 179 TYVTQSGSLMMSF-RVYLSNSDASIRYADDVHDRIWSPFNGSSHT 222
>At1g50260.1 68414.m05635 C2 domain-containing protein low
similarity to CLB1 [Lycopersicon esculentum] GI:2789434;
contains Pfam profile PF00168: C2 domain
Length = 675
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +1
Query: 547 RTRVLRPSADLPSRKVVSVSFRARSARFCTTAVQRSAQN 663
R+RVLRPS + + + +S FR S T R A N
Sbjct: 37 RSRVLRPSVKISNFRFISCGFRGNSKNLRLTDSSRKAAN 75
>At1g76965.1 68414.m08961 glycine-rich protein
Length = 158
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 423 PGTGRIRFPSKPDTPRSSEPILIPKLRIQFAD 328
PG + FP KP+ P P +P+L + F D
Sbjct: 93 PGAAIVVFPKKPEEPVKVVPTPMPQLNLFFGD 124
>At5g57840.1 68418.m07233 transferase family protein similar to
anthranilate N-hydroxycinnamoyl/benzoyltransferase from
Dianthus caryophyllus [gi:2239091]
Length = 443
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -3
Query: 298 EALHLGDLLRIWVRTARHLHVHPSPEFSRSAESIRTPP 185
EA LG ++ W TAR L V +P R+ R PP
Sbjct: 157 EATSLGYIMEAWSLTARGLLVKLTPFLDRTVLHARNPP 194
>At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identical
to low affinity calcium antiporter CAX2 (GI:1488267)
[Arabidopsis thaliana]; Ca2+:Cation Antiporter (CaCA)
Family member PMID:11500563
Length = 441
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +3
Query: 12 SINDPSSLKTSVRRGNPKWPEDAAERSGKSFLFC--LSVRVPWNPI 143
S+ + SL TS + PK P+++ S K +FC L++ +P+ P+
Sbjct: 41 SLMEQGSLSTSFPQHTPKAPKNSVLNSIKIVIFCNKLNLLLPFGPL 86
>At2g02800.2 68415.m00225 protein kinase (APK2b) identical to
protein kinase APK2b [Arabidopsis thaliana]
gi|2852449|dbj|BAA24695
Length = 426
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = -1
Query: 489 LRPHYIKILTR*NEHNARTSTRPGTGRIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 313
LRP ++L + ++ ST+PGTG ++ D+PR S ++ K +++ D P LH
Sbjct: 352 LRPKMSEVLAKLDQLE---STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408
>At2g02800.1 68415.m00224 protein kinase (APK2b) identical to
protein kinase APK2b [Arabidopsis thaliana]
gi|2852449|dbj|BAA24695
Length = 426
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = -1
Query: 489 LRPHYIKILTR*NEHNARTSTRPGTGRIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 313
LRP ++L + ++ ST+PGTG ++ D+PR S ++ K +++ D P LH
Sbjct: 352 LRPKMSEVLAKLDQLE---STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/45 (37%), Positives = 20/45 (44%)
Frame = -3
Query: 262 VRTARHLHVHPSPEFSRSAESIRTPPQMRCSSRSEPYLPSIGFHG 128
+RTAR H PS RS R+ + S R Y PS G G
Sbjct: 167 LRTARGRHKSPSYSPRRSVSCSRSRSRSYSSDRGRSYSPSYGRRG 211
>At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to
autophagy 7 [Arabidopsis thaliana] GI:19912147; contains
Pfam profile PF00899: ThiF family
Length = 697
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -1
Query: 210 PQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRR 76
P ++G CG +V NH++LL +S+ L+ ++S +R +
Sbjct: 42 PISITGFYGPCGHPQVSNHLTLLSESLPLDEQSLIASTSHGNRNK 86
>At5g42370.1 68418.m05159 expressed protein
Length = 447
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -2
Query: 149 PFYRIPWNSNAQAEKKTLPGPLGGVFRPL-WVTPSNTR 39
P Y + + Q+ +K +P PL + R L W TPS R
Sbjct: 285 PLYDVTSSGLVQSVEKVVPRPLRSIVRLLFWYTPSTMR 322
>At2g03890.2 68415.m00352 phosphatidylinositol 3- and 4-kinase
family protein low similarity to phosphatidylinositol
4-kinase type-II beta [Homo sapiens] GI:20159767;
contains Pfam profile PF00454: Phosphatidylinositol 3-
and 4-kinase
Length = 530
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = -1
Query: 132 MELERSGRKENSSRTSRRRLQATLGYPVEHSFLKTRDRLL 13
MEL+RS ++ T +RRLQ L +P E S L D +L
Sbjct: 60 MELDRS----DNVHTVKRRLQIALNFPTEESSLTYGDMVL 95
>At2g03890.1 68415.m00351 phosphatidylinositol 3- and 4-kinase
family protein low similarity to phosphatidylinositol
4-kinase type-II beta [Homo sapiens] GI:20159767;
contains Pfam profile PF00454: Phosphatidylinositol 3-
and 4-kinase
Length = 650
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = -1
Query: 132 MELERSGRKENSSRTSRRRLQATLGYPVEHSFLKTRDRLL 13
MEL+RS ++ T +RRLQ L +P E S L D +L
Sbjct: 60 MELDRS----DNVHTVKRRLQIALNFPTEESSLTYGDMVL 95
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +1
Query: 208 RTLKIQVRDVRGDVAPFVPISAAGLQGEEPLVDRIM*VREVGKLD 342
R L +QV+DV +AP V +S G+ + I + + KLD
Sbjct: 104 RDLALQVKDVFDAIAPAVGLSVGSAVGQSSIAGEISQLIKTPKLD 148
>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
[Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
thaliana]
Length = 926
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -3
Query: 205 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQK 107
+S + P R ++PYLPS G RTLR+K
Sbjct: 215 QSQKDHPSKRILFTNQPYLPSETPSGLRTLREK 247
>At1g10910.1 68414.m01253 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 652
Score = 28.3 bits (60), Expect = 5.1
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Frame = +1
Query: 496 YIFNRHSRKSSYVS-DWIRTRVLRPSADLPSRKVV----SVSFRARSARFCTTAVQRSAQ 660
++FN HSR SS +S + R+L P+A S V+ +V+ RS R + + R +
Sbjct: 16 HLFNTHSRPSSSLSIPALSLRILTPTAATTSSAVIELPANVAEAPRSKRHSNSYLARKSA 75
Query: 661 NWHGQGESDCL 693
Q SD L
Sbjct: 76 ISEVQRSSDFL 86
>At3g29765.1 68416.m03762 hAT dimerisation domain-containing protein
Length = 536
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -3
Query: 289 HLGDLLRIWVRTARHLHVHP 230
HLGDL R+ V T +HL HP
Sbjct: 441 HLGDLARVMVETRKHLS-HP 459
>At5g22390.1 68418.m02612 expressed protein
Length = 202
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 84 ERSGKSFLFCLSVRVPWNPIEG 149
+ S KSFL LS PWNP +G
Sbjct: 17 DNSPKSFLDTLSSSSPWNPSKG 38
>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
DNA Helicase [Arabidopsis thaliana] GI:11121449
Length = 1188
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -3
Query: 247 HLHVHPSPEFSRSAESIRTPPQMRCSSRSE 158
H H +P+ S S S+RTPP R +SR E
Sbjct: 229 HYHSTSTPQPSVSNFSLRTPPVDRSASRLE 258
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,135,841
Number of Sequences: 28952
Number of extensions: 355839
Number of successful extensions: 1066
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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