Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0418
(779 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ325105-1|ABD14119.1| 180|Apis mellifera complementary sex det... 25 1.0
AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex det... 23 3.2
AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein. 22 5.6
AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein. 22 5.6
AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein. 22 5.6
AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein. 22 5.6
AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein. 22 5.6
AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein. 22 5.6
AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex det... 22 5.6
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 22 7.4
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 22 7.4
AM420631-1|CAM06631.1| 153|Apis mellifera bursicon subunit alph... 21 9.7
AF080430-1|AAC28863.2| 208|Apis mellifera ribosomal protein S8 ... 21 9.7
>DQ325105-1|ABD14119.1| 180|Apis mellifera complementary sex
determiner protein.
Length = 180
Score = 24.6 bits (51), Expect = 1.0
Identities = 24/100 (24%), Positives = 39/100 (39%)
Frame = -1
Query: 461 LDSRIPLVRASSELTVERRSYRIVPIAHETKPTRPYG*EDPRKAGERGSGSSPKRKTIFA 282
L+ R R S E+ SY+ K R Y ++ ++ K + I +
Sbjct: 30 LEERTSRKRYSRSREREQNSYK------NEKEYRKYRERSKERSRDKRERERSKERKIIS 83
Query: 281 SVILNIYSFEAALY*NTNSLKRT*RTNIDQTRHRPHPLPV 162
S + N Y + Y N N+ + NI+ P P+PV
Sbjct: 84 S-LSNNYISNISNYNNNNNYNKKLYYNINYIEQIPVPVPV 122
>AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex
determiner protein.
Length = 418
Score = 23.0 bits (47), Expect = 3.2
Identities = 23/100 (23%), Positives = 39/100 (39%)
Frame = -1
Query: 461 LDSRIPLVRASSELTVERRSYRIVPIAHETKPTRPYG*EDPRKAGERGSGSSPKRKTIFA 282
L+ R R S E++SY+ R Y ++ ++ K + I +
Sbjct: 268 LEERTSRKRYSRSREREQKSYK------NENSYRKYRETSKERSRDKTERERSKERKIIS 321
Query: 281 SVILNIYSFEAALY*NTNSLKRT*RTNIDQTRHRPHPLPV 162
S + N Y + Y N N+ + NI+ P P+PV
Sbjct: 322 S-LSNNYISNISNYNNNNNYNKKLYYNINYIEQIPVPVPV 360
>AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.2 bits (45), Expect = 5.6
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 403 RTESCRSRTKRNRHD 359
RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240
>AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.2 bits (45), Expect = 5.6
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 403 RTESCRSRTKRNRHD 359
RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240
>AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.2 bits (45), Expect = 5.6
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 403 RTESCRSRTKRNRHD 359
RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240
>AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.2 bits (45), Expect = 5.6
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 403 RTESCRSRTKRNRHD 359
RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240
>AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.2 bits (45), Expect = 5.6
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 403 RTESCRSRTKRNRHD 359
RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240
>AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein.
Length = 400
Score = 22.2 bits (45), Expect = 5.6
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 403 RTESCRSRTKRNRHD 359
RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240
>AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 22.2 bits (45), Expect = 5.6
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 403 RTESCRSRTKRNRHD 359
RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 21.8 bits (44), Expect = 7.4
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = +1
Query: 472 ALRWPSRVLTQCVSAQCSECQREEIQASAGKRR 570
ALRW SR L + E Q + A + R
Sbjct: 1632 ALRWRSRYLGDRMQRPMKESQENQQNAETQRER 1664
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 21.8 bits (44), Expect = 7.4
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = +1
Query: 472 ALRWPSRVLTQCVSAQCSECQREEIQASAGKRR 570
ALRW SR L + E Q + A + R
Sbjct: 1628 ALRWRSRYLGDRMQRPMKESQENQQNAETQRER 1660
>AM420631-1|CAM06631.1| 153|Apis mellifera bursicon subunit alpha
protein precursor protein.
Length = 153
Score = 21.4 bits (43), Expect = 9.7
Identities = 7/22 (31%), Positives = 12/22 (54%)
Frame = -3
Query: 753 QCQTRVKLNRSSFPADSPKPVP 688
+CQ ++ +P PKP+P
Sbjct: 28 ECQATPVIHFLQYPGCVPKPIP 49
>AF080430-1|AAC28863.2| 208|Apis mellifera ribosomal protein S8
protein.
Length = 208
Score = 21.4 bits (43), Expect = 9.7
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 490 RVLTQCVSAQCSECQREEIQASAGKRRE 573
RVL C+S++ +C RE+ GK E
Sbjct: 170 RVLA-CISSRPGQCGREDGYILEGKELE 196
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,537
Number of Sequences: 438
Number of extensions: 5103
Number of successful extensions: 17
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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