Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0417
(723 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 174 9e-45
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 102 6e-23
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 101 1e-22
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 97 2e-21
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 71 2e-13
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 64 2e-11
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 56 5e-09
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 54 3e-08
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 42 7e-05
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 30 0.29
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 30 0.38
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 27 2.7
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 2.7
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom... 27 3.6
SPAC1296.04 |mug65||spore wall assembly protein |Schizosaccharom... 27 3.6
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 4.7
SPBC530.01 |gyp1||GTPase activating protein Gyp1 |Schizosaccharo... 26 6.3
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 26 6.3
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1... 26 6.3
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha... 25 8.3
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 25 8.3
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 174 bits (424), Expect = 9e-45
Identities = 77/84 (91%), Positives = 81/84 (96%)
Frame = +1
Query: 256 LKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 435
LKYPIEHGI+ NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMTQI+FET
Sbjct: 67 LKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQIIFET 126
Query: 436 FNSPAMYVAIQAVLSLYASGRTTG 507
FN+PA YVAIQAVLSLYASGRTTG
Sbjct: 127 FNAPAFYVAIQAVLSLYASGRTTG 150
Score = 143 bits (346), Expect = 3e-35
Identities = 66/71 (92%), Positives = 70/71 (98%)
Frame = +3
Query: 510 VLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRD 689
VLDSGDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMKIL ERGY+F+TTAEREIVRD
Sbjct: 152 VLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMERGYTFSTTAEREIVRD 211
Query: 690 IKEKLCYVALD 722
IKEKLCYVALD
Sbjct: 212 IKEKLCYVALD 222
Score = 130 bits (313), Expect = 3e-31
Identities = 57/64 (89%), Positives = 63/64 (98%)
Frame = +2
Query: 62 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 241
++++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 242 RGIL 253
RGIL
Sbjct: 62 RGIL 65
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 102 bits (244), Expect = 6e-23
Identities = 43/84 (51%), Positives = 64/84 (76%)
Frame = +1
Query: 256 LKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 435
+KYP+E+GII ++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM + MFE
Sbjct: 67 VKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCETMFER 126
Query: 436 FNSPAMYVAIQAVLSLYASGRTTG 507
+ +YVAIQAVLSLYA G ++G
Sbjct: 127 YGFGGVYVAIQAVLSLYAQGLSSG 150
Score = 94.3 bits (224), Expect = 2e-20
Identities = 41/71 (57%), Positives = 54/71 (76%)
Frame = +3
Query: 510 VLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRD 689
V+DSGDGV+H VP+YE L H + RLD+AGRD T YL+ +L +GY+F TA+ E VR+
Sbjct: 152 VVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDATRYLISLLLRKGYAFNRTADFETVRE 211
Query: 690 IKEKLCYVALD 722
+KEKLCYV+ D
Sbjct: 212 MKEKLCYVSYD 222
Score = 56.8 bits (131), Expect = 3e-09
Identities = 30/62 (48%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Frame = +2
Query: 74 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRG 247
A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++ R
Sbjct: 4 APIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAVRS 63
Query: 248 IL 253
+L
Sbjct: 64 LL 65
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 101 bits (241), Expect = 1e-22
Identities = 44/79 (55%), Positives = 54/79 (68%)
Frame = +1
Query: 256 LKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 435
L YPI HG I NWD ME+ W + + LR PE+H LLTE PLNP NRE +IMFE+
Sbjct: 90 LDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFES 149
Query: 436 FNSPAMYVAIQAVLSLYAS 492
FN +Y+A+QAVL+L AS
Sbjct: 150 FNCAGLYIAVQAVLALAAS 168
Score = 62.1 bits (144), Expect = 8e-11
Identities = 35/79 (44%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Frame = +3
Query: 492 RSYHRYVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGY--SFTTT 665
RS V+DSGDGV+H +P+ EGY + +I + LAGRD+T ++ +L +R S T
Sbjct: 177 RSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEPDSSLKT 236
Query: 666 AEREIVRDIKEKLCYVALD 722
AER IKE+ CYV D
Sbjct: 237 AER-----IKEECCYVCPD 250
Score = 42.7 bits (96), Expect = 5e-05
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Frame = +2
Query: 80 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYVGDE 229
+++DNG+G K G+AG+DAP VFP+++ R G G + K SY+ +
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASK 58
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 97.1 bits (231), Expect = 2e-21
Identities = 44/85 (51%), Positives = 60/85 (70%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 LKYPIEHGIITNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 432
++ PIE GII NW DME+IW + + ++ L PEEHP+LLTE PL N+EK+ + +E
Sbjct: 71 IQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYE 130
Query: 433 TFNSPAMYVAIQAVLSLYASGRTTG 507
T N PA+ ++Q VL+LYAS RTTG
Sbjct: 131 TLNVPALSFSLQPVLALYASARTTG 155
Score = 89.8 bits (213), Expect = 3e-19
Identities = 38/71 (53%), Positives = 56/71 (78%)
Frame = +3
Query: 510 VLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRD 689
VL+ GDG++H+VPIY+G+++P AI + ++ GRD+TDYL L + G+ ++AE+EIVR+
Sbjct: 157 VLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYLQLQLRKSGHELVSSAEKEIVRE 216
Query: 690 IKEKLCYVALD 722
IKEK CYVA D
Sbjct: 217 IKEKCCYVASD 227
Score = 76.2 bits (179), Expect = 4e-15
Identities = 34/62 (54%), Positives = 44/62 (70%)
Frame = +2
Query: 68 DVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 247
D + +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG
Sbjct: 8 DNQPICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRG 67
Query: 248 IL 253
+L
Sbjct: 68 LL 69
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 70.5 bits (165), Expect = 2e-13
Identities = 32/83 (38%), Positives = 47/83 (56%)
Frame = +1
Query: 256 LKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 435
+K I +G + NWD +W + +L+ P EHP+L+TE NP NR K + MFE+
Sbjct: 65 IKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMFES 124
Query: 436 FNSPAMYVAIQAVLSLYASGRTT 504
PA Y+A Q + +ASG+ T
Sbjct: 125 LRCPATYLAKQETCAAFASGKGT 147
Score = 40.7 bits (91), Expect = 2e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +2
Query: 65 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 166
D+V+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 64.1 bits (149), Expect = 2e-11
Identities = 28/74 (37%), Positives = 45/74 (60%)
Frame = +1
Query: 265 PIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNS 444
P E +I+NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE +N+
Sbjct: 86 PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNA 144
Query: 445 PAMYVAIQAVLSLY 486
P++ I + S Y
Sbjct: 145 PSVAYGIDGLFSFY 158
Score = 37.5 bits (83), Expect = 0.002
Identities = 21/58 (36%), Positives = 34/58 (58%)
Frame = +2
Query: 2 AAVESIPASPTQTHTKFKMCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 175
A E + + PT + F+ +D+ LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 5 AVREPVFSGPTPS---FQNVSNDIP-LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
Score = 31.1 bits (67), Expect = 0.17
Identities = 17/71 (23%), Positives = 30/71 (42%)
Frame = +3
Query: 510 VLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRD 689
VL+ G+ SH +P+ G + R+ G + YL+K+ + SF
Sbjct: 169 VLNLGNAASHVIPVLNGERILSEAKRISWGGSQSSSYLLKLFQIKYPSFPIKMLPSQAEL 228
Query: 690 IKEKLCYVALD 722
+ C+V+ D
Sbjct: 229 LMHDHCHVSSD 239
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 56.0 bits (129), Expect = 5e-09
Identities = 24/77 (31%), Positives = 45/77 (58%)
Frame = +1
Query: 274 HGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAM 453
+GII +W+ W +L+V P E+ +++TE NP++ R+++ + FE + PA
Sbjct: 74 NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAF 133
Query: 454 YVAIQAVLSLYASGRTT 504
Y+ QAV +A+ ++T
Sbjct: 134 YLTKQAVCVAFANSKST 150
Score = 36.3 bits (80), Expect = 0.004
Identities = 18/57 (31%), Positives = 33/57 (57%)
Frame = +2
Query: 65 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 235
+++ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQ 58
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 53.6 bits (123), Expect = 3e-08
Identities = 25/69 (36%), Positives = 43/69 (62%)
Frame = +3
Query: 510 VLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRD 689
V+DSG +H +P+ + A+ R+D+ G+ LT+YL ++++ R Y+ E IV +
Sbjct: 160 VIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYNM--MEETYIVNE 217
Query: 690 IKEKLCYVA 716
IKE +CYV+
Sbjct: 218 IKESVCYVS 226
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 42.3 bits (95), Expect = 7e-05
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Frame = +1
Query: 250 PHLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMT 417
P+ PI+ G + +W+ ++ W H Y+ L P + +PV L +RE T
Sbjct: 108 PNEIQPIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELAT 166
Query: 418 QIMFETFNSPAMYVAIQAVLSLYASG 495
Q FE P +A + ++ LYA G
Sbjct: 167 QFFFEECQVPGFTIAYEPLMGLYAIG 192
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 30.3 bits (65), Expect = 0.29
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +1
Query: 325 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNSPAM---YVAIQ 468
+Y L E+HP+LLT+ A L P+ + ++ +I ++ N+P + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 29.9 bits (64), Expect = 0.38
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +2
Query: 125 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 247
G+ PRA F ++ P H G+++ M KD G+E S +G
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKG 540
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 27.1 bits (57), Expect = 2.7
Identities = 12/49 (24%), Positives = 26/49 (53%)
Frame = +3
Query: 510 VLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 656
V+D G + + EG +P++ ++++ G D+T MK+L + +
Sbjct: 295 VVDMGAQKTSISCVEEGVVVPNSRIKINYGGDDITLLFMKLLMRSHFPY 343
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.1 bits (57), Expect = 2.7
Identities = 19/65 (29%), Positives = 29/65 (44%)
Frame = +1
Query: 499 TTGTCSTPEMVSPTPYPSTKVTLCPTPSSVWTWLVAT*PTTS*RFSPRGVTRSPPPLRGK 678
T+ +C+T + PT +T VT P+S + P ++ S G + SP P
Sbjct: 281 TSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPAST---SSTGTSSSPLPSTST 337
Query: 679 SFVTS 693
S TS
Sbjct: 338 SCTTS 342
Score = 27.1 bits (57), Expect = 2.7
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +1
Query: 499 TTGTCSTPEMVSPTPYPSTKVTLCPTPSSVWTWLVAT*PTTS 624
T+ +C+T + PT +T VT P+S T L T TTS
Sbjct: 389 TSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTPLTTTNCTTS 430
>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 561
Score = 26.6 bits (56), Expect = 3.6
Identities = 30/119 (25%), Positives = 47/119 (39%), Gaps = 3/119 (2%)
Frame = +1
Query: 346 APEEHPVLLTEAPLNPKA---NREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGTCS 516
+P+++ VL+ P+NP + +R N I + SL + GR T
Sbjct: 339 SPKKNKVLVNMRPINPSSFVSDRHSPLHPYSVPENGKPNMGRIPSAPSL-SKGRAM-TAD 396
Query: 517 TPEMVSPTPYPSTKVTLCPTPSSVWTWLVAT*PTTS*RFSPRGVTRSPPPLRGKSFVTS 693
+M+S T S + P+ + L + F PR R PP+RG V S
Sbjct: 397 NMDMLSLTTRRSRRSLYSPSLMQMQQSLKSDYEGLGRTFDPRFAPRGSPPVRGGKNVLS 455
>SPAC1296.04 |mug65||spore wall assembly protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 26.6 bits (56), Expect = 3.6
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +1
Query: 550 STKVTLCPTPSSVWTW 597
STK CP PS W W
Sbjct: 52 STKTATCPDPSWEWAW 67
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 4.7
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 367 LLTEAPLNPKANREKMTQIMFETFN 441
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPBC530.01 |gyp1||GTPase activating protein Gyp1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 25.8 bits (54), Expect = 6.3
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = -2
Query: 518 VEHVPVVRPEAYSESTAWMATYMAGELKVSNMIWVIFSLLALGLRGAS 375
V+H+ + + S WM + EL +SN+I + + +A G++G S
Sbjct: 401 VKHLQMEGVDFLQFSFRWMNCLLMRELSISNIIRMWDTYMAEGVQGFS 448
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 25.8 bits (54), Expect = 6.3
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +1
Query: 478 SLYASGRTTGTCSTPEMVSPTPYPSTKVTLCPTPSSVWTWLVAT*PTTS 624
S + + T+ +C+ ++ T ST T CP P+++ L+ T PTT+
Sbjct: 159 STFVADTTSTSCNPATVLIVTTSGSTS-TSCPPPTTI---LIVTVPTTT 203
>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1004
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 508 TCSTPEMVSPTPYPSTKVTLCPTPS 582
T TP+++S P S K L P PS
Sbjct: 902 TLETPKVISARPAESVKQPLTPVPS 926
>SPCC1753.02c |git3||G-protein coupled receptor
Git3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 514 STPEMVSPTPYPSTKVTLCPTPSS 585
+ P+ V+ P+P T TL TPS+
Sbjct: 241 TAPDQVALPPFPDTNSTLTYTPSN 264
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 25.4 bits (53), Expect = 8.3
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +1
Query: 538 TPYPSTKVTLCPTPSSVWTWLVAT*PTTS*RFSPRGVTRS 657
TP P+ L PS +T V PTT+ +P+ T S
Sbjct: 359 TPLPAVPTVLSGLPSVAYTPPVMHIPTTNSPLTPQSFTNS 398
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,919,995
Number of Sequences: 5004
Number of extensions: 61922
Number of successful extensions: 254
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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