Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0417
         (723 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.9  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   3.9  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   5.1  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   5.1  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   8.9  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   8.9  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 337  LRVAPEEHPVLLTEAPLNPKANREKM 414
            LR+ P  H V+ T   +NP  + EK+
Sbjct: 1461 LRLGPCWHAVMTTYPRINPDNHNEKL 1486


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 345 DTQLIVEGVVPDLLHVI 295
           + Q +V+ V PD+LH+I
Sbjct: 21  NNQTVVDKVPPDMLHLI 37


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
 Frame = +2

Query: 533 LPHRTHLRRLRSAPRHPPSGLGWSRLDRLPHEDSHREGLLVHH--HR*EGNRS*HQGEAL 706
           LP  T+       P+H P+ L  S+++ +   D H     ++   H    + S   GE L
Sbjct: 367 LPTSTYSGSPTELPKHLPTSLTKSKMEVMELSDLHHPNCKINRKVHHTTSSSSAAGGEGL 426

Query: 707 LCR 715
             R
Sbjct: 427 ADR 429


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = -2

Query: 698 LLDVTNDFPLSGGGERVTPLGENLHEVVGQVATSQVQTEDGVGQS-VTFVDGYGVGDT 528
           ++D+T     S  G+ V      L+ +VG  A   +  E+G G + VT  + +   DT
Sbjct: 18  MVDLTQCLQESSTGQSVEFSPMELNALVGTPAAPNMPAEEGEGMAGVTGEEPFDTLDT 75


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 10/30 (33%), Positives = 11/30 (36%)
 Frame = +2

Query: 572 PRHPPSGLGWSRLDRLPHEDSHREGLLVHH 661
           P H   G G S +   PH   H      HH
Sbjct: 414 PHHHTMGHGHSHIHATPHH-HHSHAATPHH 442


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 101 GMCKAGFAGD 130
           GMCK G +GD
Sbjct: 130 GMCKEGISGD 139


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,164
Number of Sequences: 438
Number of extensions: 4167
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)