Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0416
         (749 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    26   1.1  
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    25   2.5  
AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript...    25   2.5  
AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein pr...    24   5.8  

>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1099

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
 Frame = +1

Query: 73  RTLDVRSGRMKL-SSYVRD----FRTPEASRFQSVNEGAL*AQMLGPERW*TM-PGQVEV 234
           RT  V +G  ++  SY +D    + T E    +SV  G     +LGP  W TM  G +++
Sbjct: 588 RTKRVPAGLQRIIHSYFQDRELVYETSEGPVVRSVTAGVPQGSILGPTLWNTMYDGVLDI 647

Query: 235 RGNPD 249
              PD
Sbjct: 648 ALPPD 652


>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1201

 Score = 25.0 bits (52), Expect = 2.5
 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
 Frame = -3

Query: 741 GSV*AKRFSAIHFQGWLLRQVSRCTLLSGFRLPWPPSC-CHERPTPFMVSHERFLGALNT 565
           GS   +R      +G +  QV+  T +S +    PPS   HE         ER LGA+  
Sbjct: 125 GSYPIQRVWGSELRGLVAAQVAGITFISVYA---PPSLSAHE--------FERLLGAIEL 173

Query: 564 FGSSHSASSAYQNWPTWH 511
             +SHS      ++  WH
Sbjct: 174 EAASHSRVVVAGDFNAWH 191


>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 25.0 bits (52), Expect = 2.5
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -3

Query: 627 CHERPTPFMVSHERFLGALNTFGSSHSASSAYQNWPTWH 511
           C+ RP      +E FL A+    S+HS      ++  WH
Sbjct: 110 CYARPRRPEEDYEGFLAAVQLEASTHSQVVIDGDFNAWH 148


>AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein
           protein.
          Length = 942

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +3

Query: 414 RGIGAETTSTYSQTLNG*ELRLTRTMKPEI*CGAKWANFGKQNWRCGMN-QTYLRRLKNA 590
           +GI  + T+ YS   NG   R  RT+     C    A  G + W   +N   YL+ + ++
Sbjct: 160 KGIVPQFTAGYSPQQNGVAERKNRTLVEMARCMLIDAKLGYRFWAEAINAAVYLQNISSS 219


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 808,614
Number of Sequences: 2352
Number of extensions: 17052
Number of successful extensions: 46
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 77339358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)