Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0415
         (727 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q59001 Cluster: Probable glycogen synthase; n=6; Methan...    36   1.3  
UniRef50_Q6BK16 Cluster: Similar to CA0248|IPF7262 Candida albic...    33   5.4  
UniRef50_A2EK57 Cluster: Putative uncharacterized protein; n=1; ...    33   9.5  

>UniRef50_Q59001 Cluster: Probable glycogen synthase; n=6;
           Methanococcales|Rep: Probable glycogen synthase -
           Methanococcus jannaschii
          Length = 521

 Score = 35.5 bits (78), Expect = 1.3
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = -1

Query: 376 HSVRLIHL*KPSENLKAELCNCVNVNSEYMLKLISYSLPLNNIFF 242
           H +R + L K   +++  L N  N +   +L LI YSLPL+++ F
Sbjct: 326 HDIRFVFLTKGDRDIEERLKNLANEHDGRILALIGYSLPLSSLVF 370


>UniRef50_Q6BK16 Cluster: Similar to CA0248|IPF7262 Candida albicans
           IPF7262; n=1; Debaryomyces hansenii|Rep: Similar to
           CA0248|IPF7262 Candida albicans IPF7262 - Debaryomyces
           hansenii (Yeast) (Torulaspora hansenii)
          Length = 309

 Score = 33.5 bits (73), Expect = 5.4
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +1

Query: 331 LNFQKAFINVLI*QSARYENGSNLISHVLIYNTIGYYN 444
           LN++   +NV+  Q+  + NG  L+  V +YNTIG  N
Sbjct: 254 LNYKLQLLNVVKEQNKAFRNGQVLVKEVKMYNTIGARN 291


>UniRef50_A2EK57 Cluster: Putative uncharacterized protein; n=1;
            Trichomonas vaginalis G3|Rep: Putative uncharacterized
            protein - Trichomonas vaginalis G3
          Length = 1818

 Score = 32.7 bits (71), Expect = 9.5
 Identities = 19/60 (31%), Positives = 34/60 (56%)
 Frame = +3

Query: 177  FARCTYSIYMYITYKCSVVHQIKKMLLRGNEYEISFNMYSELTFTQLHSSAFKFSEGFYK 356
            FAR T S+   ++Y   V++++K +LL   +YE S +M S   +  L++  F    GF++
Sbjct: 967  FARQTMSLKDVLSY---VIYRLKLLLLA--KYECSISMSSSNLYPSLYNGKFSMETGFFQ 1021


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 511,231,545
Number of Sequences: 1657284
Number of extensions: 8371057
Number of successful extensions: 15060
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15058
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 59090914597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)