Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0415
         (727 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0515 - 24483282-24483478,24486451-24486927,24486949-24489580     28   6.6  
06_01_0723 - 5287864-5287885,5287971-5288043,5288521-5288626,528...    28   8.7  

>11_06_0515 - 24483282-24483478,24486451-24486927,24486949-24489580
          Length = 1101

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +3

Query: 222  CSVVHQIKKMLLRGNEYEISFNMYSELT 305
            C  +H I + LLRGN  EI  N    LT
Sbjct: 1005 CPALHSISEGLLRGNSIEIHMNDCPNLT 1032


>06_01_0723 -
           5287864-5287885,5287971-5288043,5288521-5288626,
           5288829-5288891,5290165-5290249,5290337-5290377,
           5291260-5291323,5291647-5291716,5291886-5291960,
           5292070-5292164,5293671-5293771,5293852-5293874,
           5293956-5294031,5294229-5294322,5294493-5294548,
           5296204-5296327,5296607-5296743
          Length = 434

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 177 FARCTYSIYMYITYKCSVVHQIKKML 254
           F  C Y++ +Y+    SVVH+IK  L
Sbjct: 397 FLYCAYTVGLYLHLAVSVVHEIKDAL 422


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,845,490
Number of Sequences: 37544
Number of extensions: 200968
Number of successful extensions: 309
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)