Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0413
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    27   1.9  
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S...    26   4.4  
SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase |Schizo...    26   4.4  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    26   5.8  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    25   7.7  

>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 467 AGPIWQILVLNYLWKSRE 414
           +GPIWQ+   N  W+SRE
Sbjct: 917 SGPIWQLKKENNYWESRE 934


>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +3

Query: 555 ESLKTAILESTIKDLVRVPVVSYRHIKMRI 644
           +SLK  ILE ++ DL +    S+R +K+R+
Sbjct: 59  DSLKGRILEVSLADLQKDEEHSFRKVKLRV 88


>SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 414 FSGLPQIIQDQNLPNRSSRSRVLARLTNSNSF 509
           +S +PQ  Q   +PN +  SR+   L+NS  F
Sbjct: 381 YSDIPQQFQCDYVPNVAKESRINVALSNSFGF 412


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +3

Query: 546 WSIESLKTAILESTIKDLVRVPVVSYRHIKMRI 644
           W + SLK   L S I + +++PV + + +   I
Sbjct: 749 WQVSSLKVVNLSSNILEKIKLPVATSKKLTRTI 781


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +2

Query: 251 HLVPQLISKKPIL--LYKINLKQSKGIRPTGDTSKEKQNYCFYLIPS 385
           H V Q ISK   L   YK+++  +K I   G   +  + YC+Y I S
Sbjct: 838 HGVSQ-ISKNQFLEESYKMDVSANKLIHSFGHFLRRLREYCYYAIAS 883


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,856,733
Number of Sequences: 5004
Number of extensions: 61109
Number of successful extensions: 123
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)