Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0413
         (683 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0547 - 17032318-17032392,17032893-17032962,17032979-170331...    29   2.6  
11_04_0163 + 14296868-14297380,14297548-14297622,14298149-14298223     29   3.4  

>04_03_0547 -
           17032318-17032392,17032893-17032962,17032979-17033103,
           17033196-17033252,17034152-17034217
          Length = 130

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 307 KTIKRNPSDGGHIKRKTK-LLFLFNSEHFHIYLH 405
           K  +R PS GG I    K LL L++ +H H ++H
Sbjct: 89  KDPERKPSLGGDISLPAKILLMLYDQDHTHSFMH 122


>11_04_0163 + 14296868-14297380,14297548-14297622,14298149-14298223
          Length = 220

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 298 NKLKTIKRNPSDGGHIKRKTK-LLFLFNSEHFHIYLH 405
           N +   +R PS GG I   T+ LL L++ +H   Y+H
Sbjct: 176 NNMMDSERKPSLGGEIAPPTEILLMLYDQDHTPTYMH 212


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,214,115
Number of Sequences: 37544
Number of extensions: 304296
Number of successful extensions: 497
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)