Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0413
         (683 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43724| Best HMM Match : AMP-binding (HMM E-Value=2.6e-09)           29   2.7  
SB_4563| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.1  
SB_57101| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_43724| Best HMM Match : AMP-binding (HMM E-Value=2.6e-09)
          Length = 490

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
 Frame = +2

Query: 248 RHLV-PQLISKKPILLYKINLKQSKGIRPTGDTSKEKQNYCFYLIPSIFIFIYILNLLWT 424
           RHL+ P+++    +LLY I L   +G+R       ++   C      +  FI+++ LL T
Sbjct: 415 RHLLGPEVVHFIEVLLYNIYLHGPEGVRYKEALIYKRYLPCPEGARYLDDFIHVVMLLRT 474

Query: 425 STNNSRPKFAKSVQ 466
             + S P+ AK+++
Sbjct: 475 YVDLSCPQIAKAIR 488


>SB_4563| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1473

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +1

Query: 316  KRNPSDGGHIKRKTKLLFLFNSEHFHIYLHFKPSLDFHK*FKTKICQI 459
            +R  S G H+  +   +F++    F ++ HFK  +   K    ++CQI
Sbjct: 1345 RRTSSRGNHLNMRRNAMFVYAKTKFLMWYHFKKVVGARK----EVCQI 1388


>SB_57101| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 855

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
 Frame = +3

Query: 321 ESVRRGTHQKKNKIIVFI*FRAFSYLSTF*TFSGLPQIIQDQNLP---NRSSRSRVLARL 491
           + +RR   Q K  I++F+  +   Y+++  T   +  I     +P    R++R+ ++A  
Sbjct: 190 KELRRSNPQTKITIVIFVLIQGSPYVASV-TLEAIRLIHVAPGIPVFPTRATRTPLIATP 248

Query: 492 TNSNSFYINR*ES 530
           +N N  Y N  +S
Sbjct: 249 SNDNHIYTNENQS 261


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,035,341
Number of Sequences: 59808
Number of extensions: 400509
Number of successful extensions: 737
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)