Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0413
         (683 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC005094-1|AAH05094.1|  394|Homo sapiens transmembrane protein 7...    30   8.8  
AL589685-4|CAI14162.1|  394|Homo sapiens novel protein protein.        30   8.8  

>BC005094-1|AAH05094.1|  394|Homo sapiens transmembrane protein 79
           protein.
          Length = 394

 Score = 29.9 bits (64), Expect = 8.8
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +2

Query: 284 ILLYKINLKQSKGIRPTGDTSKEKQNYCFYLIPSIFIFI-YILNLLWTST 430
           IL+Y ++L     +RP G+  +E + +  Y+  S+ +FI Y  NL   ST
Sbjct: 254 ILVYGLSLLCFSALRPFGEPRREVEIHRRYVAQSVQLFILYFFNLAVLST 303


>AL589685-4|CAI14162.1|  394|Homo sapiens novel protein protein.
          Length = 394

 Score = 29.9 bits (64), Expect = 8.8
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +2

Query: 284 ILLYKINLKQSKGIRPTGDTSKEKQNYCFYLIPSIFIFI-YILNLLWTST 430
           IL+Y ++L     +RP G+  +E + +  Y+  S+ +FI Y  NL   ST
Sbjct: 254 ILVYGLSLLCFSALRPFGEPRREVEIHRRYVAQSVQLFILYFFNLAVLST 303


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,354,420
Number of Sequences: 237096
Number of extensions: 1812888
Number of successful extensions: 2398
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2398
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7783251346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)