Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0413
         (683 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75952-2|CAB00095.1| 1100|Caenorhabditis elegans Hypothetical pr...    33   0.19 
Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein.      29   4.1  
U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein...    29   4.1  
U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein...    29   4.1  
AL132898-10|CAC14416.2|  346|Caenorhabditis elegans Hypothetical...    28   5.4  

>Z75952-2|CAB00095.1| 1100|Caenorhabditis elegans Hypothetical
           protein F29D10.4 protein.
          Length = 1100

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +2

Query: 458 SVQPFSSFSETNEQQFILYK*IRKYINVPLVY*IFENSYPRKYYKGFSKSPCRIVSTHKN 637
           SV PF       E++ +LY+   +Y N P +Y + +N Y        ++S C I+S    
Sbjct: 53  SVNPFKQMPYFTEKEMLLYQGAAQYENAPHIYALADNMYRNMLID--NESQCVIISGESG 110

Query: 638 A 640
           A
Sbjct: 111 A 111


>Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical
           protein ZK662.4 protein.
          Length = 1440

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/59 (23%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
 Frame = +3

Query: 42  FSLYFYNESYK*R*IVFVW------YDTTRIYMHLRNTLIAISYSNVILHNTVLPNEKL 200
           FS++++ + Y+ +  +++        D+  +  ++R ++ + S+SNV   N V PNE++
Sbjct: 154 FSIHYFEDLYERKNAIYLRKLLLTELDSNSLLTNIRRSVNSYSFSNVKFTNIVCPNEEI 212


>Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical
           protein ZK662.4 protein.
          Length = 1440

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/59 (23%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
 Frame = +3

Query: 42  FSLYFYNESYK*R*IVFVW------YDTTRIYMHLRNTLIAISYSNVILHNTVLPNEKL 200
           FS++++ + Y+ +  +++        D+  +  ++R ++ + S+SNV   N V PNE++
Sbjct: 154 FSIHYFEDLYERKNAIYLRKLLLTELDSNSLLTNIRRSVNSYSFSNVKFTNIVCPNEEI 212


>Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein.
          Length = 1440

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/59 (23%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
 Frame = +3

Query: 42  FSLYFYNESYK*R*IVFVW------YDTTRIYMHLRNTLIAISYSNVILHNTVLPNEKL 200
           FS++++ + Y+ +  +++        D+  +  ++R ++ + S+SNV   N V PNE++
Sbjct: 154 FSIHYFEDLYERKNAIYLRKLLLTELDSNSLLTNIRRSVNSYSFSNVKFTNIVCPNEEI 212


>U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein
           protein.
          Length = 1440

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/59 (23%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
 Frame = +3

Query: 42  FSLYFYNESYK*R*IVFVW------YDTTRIYMHLRNTLIAISYSNVILHNTVLPNEKL 200
           FS++++ + Y+ +  +++        D+  +  ++R ++ + S+SNV   N V PNE++
Sbjct: 154 FSIHYFEDLYERKNAIYLRKLLLTELDSNSLLTNIRRSVNSYSFSNVKFTNIVCPNEEI 212


>U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein
           protein.
          Length = 1440

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/59 (23%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
 Frame = +3

Query: 42  FSLYFYNESYK*R*IVFVW------YDTTRIYMHLRNTLIAISYSNVILHNTVLPNEKL 200
           FS++++ + Y+ +  +++        D+  +  ++R ++ + S+SNV   N V PNE++
Sbjct: 154 FSIHYFEDLYERKNAIYLRKLLLTELDSNSLLTNIRRSVNSYSFSNVKFTNIVCPNEEI 212


>AL132898-10|CAC14416.2|  346|Caenorhabditis elegans Hypothetical
           protein Y59A8B.21 protein.
          Length = 346

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -1

Query: 389 KC-SELNKNNNFVFLLMCPPSDGFLLIVLSLFYTK 288
           KC    +K NN+ +L++   + G LL  +S FY K
Sbjct: 277 KCFGNRHKANNYGYLILSTTTSGILLAAISQFYLK 311


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,486,919
Number of Sequences: 27780
Number of extensions: 327985
Number of successful extensions: 730
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)