Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0413
         (683 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27240.1 68418.m03249 DNAJ heat shock N-terminal domain-conta...    28   6.6  
At4g04980.1 68417.m00724 hydroxyproline-rich glycoprotein family...    27   8.8  

>At5g27240.1 68418.m03249 DNAJ heat shock N-terminal
           domain-containing protein
          Length = 1104

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +2

Query: 512 YK*IRKYINVPLVY*IFENSYPRKYYKGFSKSPCR 616
           YK +RKY+N+ L   I + SY   Y  GF+++P +
Sbjct: 170 YKYLRKYVNILLNCNICQRSY-MAYDTGFNEAPSK 203


>At4g04980.1 68417.m00724 hydroxyproline-rich glycoprotein family
           protein Common family members: At4g18570, At3g25690,
           At5g61090 [Arabidopsis thaliana]
          Length = 681

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +3

Query: 459 RSSRSRVLARLTNSNSFYINR*ESI*TFPWSIESLKTAILESTIKDL 599
           RS  +  LA +T  +S++    E +  +  SIE LK++I     KD+
Sbjct: 437 RSGMADALAEMTKRSSYFQQIEEDVQKYAKSIEELKSSIHSFQTKDM 483


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,054,082
Number of Sequences: 28952
Number of extensions: 282211
Number of successful extensions: 547
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)