Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0412
(473 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch... 69 4e-13
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo... 69 4e-13
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual 27 1.5
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy... 27 1.5
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 25 4.5
SPAC25B8.17 |||peptidase family A22|Schizosaccharomyces pombe|ch... 25 7.8
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 7.8
SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces p... 25 7.8
>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 68.9 bits (161), Expect = 4e-13
Identities = 35/85 (41%), Positives = 46/85 (54%)
Frame = +2
Query: 2 SHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGP 181
S ELPRYG+K GL N+ AAY+TG E +++GP
Sbjct: 80 SSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGP 139
Query: 182 GAFRCYLDVGLARTTTGARVFGAMR 256
F+ +LDVGL RT+TG+RVFGAM+
Sbjct: 140 RPFKVFLDVGLKRTSTGSRVFGAMK 164
Score = 47.2 bits (107), Expect = 1e-06
Identities = 19/38 (50%), Positives = 28/38 (73%)
Frame = +1
Query: 253 EGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFG 366
+GA DGGL +PHS RFPG+D E+++ + E R +I+G
Sbjct: 164 KGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYG 201
Score = 39.9 bits (89), Expect = 2e-04
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = +3
Query: 369 HVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIE 473
HVAEYM L DDE+ +++QFS I G+ +D +E
Sbjct: 203 HVAEYMEMLIDDDEERYQKQFSGLIADGIESDQLE 237
>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 68.9 bits (161), Expect = 4e-13
Identities = 35/85 (41%), Positives = 46/85 (54%)
Frame = +2
Query: 2 SHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGP 181
S ELPRYG+K GL N+ AAY+TG E +++GP
Sbjct: 80 SSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGP 139
Query: 182 GAFRCYLDVGLARTTTGARVFGAMR 256
F+ +LDVGL RT+TG+RVFGAM+
Sbjct: 140 RPFKVFLDVGLKRTSTGSRVFGAMK 164
Score = 47.2 bits (107), Expect = 1e-06
Identities = 19/38 (50%), Positives = 28/38 (73%)
Frame = +1
Query: 253 EGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFG 366
+GA DGGL +PHS RFPG+D E+++ + E R +I+G
Sbjct: 164 KGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYG 201
Score = 39.9 bits (89), Expect = 2e-04
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = +3
Query: 369 HVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIE 473
HVAEYM L DDE+ +++QFS I G+ +D +E
Sbjct: 203 HVAEYMEMLIDDDEERYQKQFSGLIADGIESDQLE 237
>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 27.1 bits (57), Expect = 1.5
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -1
Query: 95 EAVFVLIADQLNMLQHNLSDQPSHHNVATHV 3
EAV + + D + L +LSD+ S+ ++A H+
Sbjct: 169 EAVVLRVIDPSSKLAEDLSDEQSYRSLAEHI 199
>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 286
Score = 27.1 bits (57), Expect = 1.5
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -2
Query: 316 HHSQGIF*WNEEH*GHRQQHPHSSKDTSTSSGAC*AYIQ 200
HH+ N +H GH H H S S+S A +IQ
Sbjct: 17 HHTHDYDHHNHDHHGH-DHHSHDSSSNSSSEAARLQFIQ 54
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 25.4 bits (53), Expect = 4.5
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 375 AEYMRSLEQDDEDSFKRQFSKYIK 446
+EY+++L D SFK+ F K+I+
Sbjct: 948 SEYLQALSNLDSRSFKQFFQKFIQ 971
>SPAC25B8.17 |||peptidase family A22|Schizosaccharomyces pombe|chr
1|||Manual
Length = 295
Score = 24.6 bits (51), Expect = 7.8
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +2
Query: 239 VFGAMRVLLTVASMFLIPSKDSLAMMQNPKSSMLKYTGLTSLV 367
VFG V++TVA+ IP+K L +NP + L GL +V
Sbjct: 153 VFGT-EVMVTVATGIDIPAKYVLPQFKNP--TRLSMLGLGDIV 192
>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1877
Score = 24.6 bits (51), Expect = 7.8
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 108 LTPYTLAQQMSQVMNTMLNL-STMDQEHLDVI 200
+ YT+ Q+ S V N++LN+ M + +D+I
Sbjct: 958 MAEYTIRQRYSHVDNSILNIEGDMSTDRIDLI 989
>SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 258
Score = 24.6 bits (51), Expect = 7.8
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +1
Query: 241 LW-SYEGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFG 366
LW S++G G NVP + +F Y+ KKF+A H+FG
Sbjct: 132 LWHSFKGMC--GRNVPATAFQFVLYEQFKKKFSA---TDHVFG 169
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,807,164
Number of Sequences: 5004
Number of extensions: 32903
Number of successful extensions: 98
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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