Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0412
         (473 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679...    77   6e-15
01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626...    77   6e-15
02_04_0381 - 22497519-22497769,22498157-22498247                       27   5.8  

>01_06_1660 +
           38966999-38967001,38967685-38967757,38967841-38967923,
           38968042-38968168,38968260-38968339,38968428-38968544,
           38968711-38968845,38969046-38969215,38969300-38969417
          Length = 301

 Score = 77.4 bits (182), Expect = 6e-15
 Identities = 42/85 (49%), Positives = 47/85 (55%)
 Frame = +2

Query: 2   SHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGP 181
           SHELPRYG++VGLTNYAAAY TG                          +Y VEP D   
Sbjct: 78  SHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEGNIEATGEDYYVEPADE-R 136

Query: 182 GAFRCYLDVGLARTTTGARVFGAMR 256
             FR  LDVGL RTTTG RVFGA++
Sbjct: 137 RPFRALLDVGLIRTTTGNRVFGALK 161



 Score = 51.6 bits (118), Expect = 3e-07
 Identities = 18/38 (47%), Positives = 31/38 (81%)
 Frame = +1

Query: 253 EGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFG 366
           +GA+DGGL++PHS KRF G+  + K+ ++++HR +I+G
Sbjct: 161 KGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYG 198



 Score = 44.4 bits (100), Expect = 5e-05
 Identities = 16/35 (45%), Positives = 27/35 (77%)
 Frame = +3

Query: 369 HVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIE 473
           HVA+YMRS+ +++ + F+  FS+Y+K G+ AD +E
Sbjct: 200 HVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGME 234


>01_06_1659 +
           38961637-38961639,38962361-38962433,38962531-38962613,
           38962732-38962858,38962950-38963029,38963112-38963228,
           38963393-38963527,38963714-38963883,38963970-38964087
          Length = 301

 Score = 77.4 bits (182), Expect = 6e-15
 Identities = 42/85 (49%), Positives = 47/85 (55%)
 Frame = +2

Query: 2   SHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGP 181
           SHELPRYG++VGLTNYAAAY TG                          +Y VEP D   
Sbjct: 78  SHELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEGNVEATGEDYYVEPADE-R 136

Query: 182 GAFRCYLDVGLARTTTGARVFGAMR 256
             FR  LDVGL RTTTG RVFGA++
Sbjct: 137 RPFRALLDVGLIRTTTGNRVFGALK 161



 Score = 51.6 bits (118), Expect = 3e-07
 Identities = 18/38 (47%), Positives = 31/38 (81%)
 Frame = +1

Query: 253 EGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFG 366
           +GA+DGGL++PHS KRF G+  + K+ ++++HR +I+G
Sbjct: 161 KGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYG 198



 Score = 44.4 bits (100), Expect = 5e-05
 Identities = 16/35 (45%), Positives = 27/35 (77%)
 Frame = +3

Query: 369 HVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIE 473
           HVA+YMRS+ +++ + F+  FS+Y+K G+ AD +E
Sbjct: 200 HVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGME 234


>02_04_0381 - 22497519-22497769,22498157-22498247
          Length = 113

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 22  WCEGWSDKLCCSIFNWSAISTKTASK 99
           +C+G+ DK CC   +WS    K  SK
Sbjct: 90  YCDGYDDKSCCD--DWSGDCHKCCSK 113


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,858,684
Number of Sequences: 37544
Number of extensions: 217348
Number of successful extensions: 486
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)