Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0412
         (473 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)         102   1e-22
SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)             100   1e-21
SB_56909| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_59374| Best HMM Match : Peptidase_A17 (HMM E-Value=0)               30   1.1  
SB_46324| Best HMM Match : Peptidase_A17 (HMM E-Value=0)               30   1.1  
SB_44075| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_25615| Best HMM Match : Peptidase_A17 (HMM E-Value=4.5e-10)         30   1.1  
SB_19321| Best HMM Match : Peptidase_A17 (HMM E-Value=0)               30   1.1  
SB_5393| Best HMM Match : Peptidase_A17 (HMM E-Value=0)                30   1.1  
SB_616| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   1.1  
SB_14886| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.4  
SB_24957| Best HMM Match : Terminase_4 (HMM E-Value=2.7)               28   4.5  
SB_41319| Best HMM Match : NACHT (HMM E-Value=5.2e-14)                 27   7.9  
SB_29875| Best HMM Match : PHD (HMM E-Value=0.0014)                    27   7.9  
SB_13736| Best HMM Match : PHD (HMM E-Value=0.001)                     27   7.9  
SB_53096| Best HMM Match : PHD (HMM E-Value=0.001)                     27   7.9  
SB_49455| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_46260| Best HMM Match : CUB (HMM E-Value=7.3e-24)                   27   7.9  
SB_29292| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_12041| Best HMM Match : PHD (HMM E-Value=0.001)                     27   7.9  
SB_6963| Best HMM Match : PHD (HMM E-Value=0.054)                      27   7.9  

>SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)
          Length = 113

 Score =  102 bits (245), Expect = 1e-22
 Identities = 49/85 (57%), Positives = 55/85 (64%)
 Frame = +2

Query: 2   SHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGP 181
           +HELPRYGVKVGLTNYAAAY TG                          EYNVE +D  P
Sbjct: 17  AHELPRYGVKVGLTNYAAAYCTGLLLARRLLTKLNLHEIYTGTEEVNGDEYNVESIDGSP 76

Query: 182 GAFRCYLDVGLARTTTGARVFGAMR 256
           GAFRC+LDVGLART+TGARVFGA++
Sbjct: 77  GAFRCFLDVGLARTSTGARVFGALK 101


>SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)
          Length = 328

 Score = 99.5 bits (237), Expect = 1e-21
 Identities = 48/85 (56%), Positives = 54/85 (63%)
 Frame = +2

Query: 2   SHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGP 181
           +HELP +GVKVGLTNYAAAY TG                          EYNVE VD  P
Sbjct: 112 AHELPNFGVKVGLTNYAAAYCTGLLLARRLLTMLNLHEIYTGTDDVNGDEYNVESVDGSP 171

Query: 182 GAFRCYLDVGLARTTTGARVFGAMR 256
           GAFRC+LDVGLART+TGARVFGA++
Sbjct: 172 GAFRCFLDVGLARTSTGARVFGALK 196



 Score = 72.9 bits (171), Expect = 1e-13
 Identities = 30/38 (78%), Positives = 35/38 (92%)
 Frame = +1

Query: 253 EGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFG 366
           +GAVDGGL +PHS+KRFPGYD+ESK F+AEVHR HIFG
Sbjct: 196 KGAVDGGLEIPHSMKRFPGYDSESKDFSAEVHRNHIFG 233



 Score = 58.4 bits (135), Expect = 3e-09
 Identities = 26/35 (74%), Positives = 31/35 (88%)
 Frame = +3

Query: 369 HVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIE 473
           HVAEYMRSL ++DE+S+KRQFS YIK GV AD+IE
Sbjct: 235 HVAEYMRSLAEEDEESYKRQFSAYIKNGVDADSIE 269


>SB_56909| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1379

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 333 ELFGFCIIARESFDGMRNIEATVNSTLIAPKTRAPVVVRAK 211
           + FGF +   E  D MR + +T++S        APV++R K
Sbjct: 564 DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 604


>SB_59374| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
          Length = 266

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 333 ELFGFCIIARESFDGMRNIEATVNSTLIAPKTRAPVVVRAK 211
           + FGF +   E  D MR + +T++S        APV++R K
Sbjct: 43  DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 83


>SB_46324| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
          Length = 266

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 333 ELFGFCIIARESFDGMRNIEATVNSTLIAPKTRAPVVVRAK 211
           + FGF +   E  D MR + +T++S        APV++R K
Sbjct: 43  DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 83


>SB_44075| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 388

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 333 ELFGFCIIARESFDGMRNIEATVNSTLIAPKTRAPVVVRAK 211
           + FGF +   E  D MR + +T++S        APV++R K
Sbjct: 43  DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 83


>SB_25615| Best HMM Match : Peptidase_A17 (HMM E-Value=4.5e-10)
          Length = 475

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 333 ELFGFCIIARESFDGMRNIEATVNSTLIAPKTRAPVVVRAK 211
           + FGF +   E  D MR + +T++S        APV++R K
Sbjct: 365 DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 405


>SB_19321| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
          Length = 780

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 333 ELFGFCIIARESFDGMRNIEATVNSTLIAPKTRAPVVVRAK 211
           + FGF +   E  D MR + +T++S        APV++R K
Sbjct: 212 DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 252


>SB_5393| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
          Length = 1244

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 333  ELFGFCIIARESFDGMRNIEATVNSTLIAPKTRAPVVVRAK 211
            + FGF +   E  D MR + +T++S        APV++R K
Sbjct: 881  DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 921


>SB_616| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1515

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 333  ELFGFCIIARESFDGMRNIEATVNSTLIAPKTRAPVVVRAK 211
            + FGF +   E  D MR + +T++S        APV++R K
Sbjct: 1159 DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 1199


>SB_14886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1028

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 205 CRLSTHHYWCSCLWSYEGAVDGGLNVPHSIK 297
           C +    Y+C+C+WS    V G L    S K
Sbjct: 62  CSVHLDFYYCTCVWSSMAGVPGSLMADPSSK 92


>SB_24957| Best HMM Match : Terminase_4 (HMM E-Value=2.7)
          Length = 354

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 414 NPHHPVQDFSCIQQHATKDVSPVYFSIELFG 322
           +P    + F+CI Q   K + PVY+S E  G
Sbjct: 101 SPESNCKYFNCIIQSKEKQIKPVYYSPEKHG 131


>SB_41319| Best HMM Match : NACHT (HMM E-Value=5.2e-14)
          Length = 961

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 22  WCEGWSDKLCCSIFNWSAISTKTASKTW 105
           +C+ W    CCSI N S  +   +S +W
Sbjct: 102 YCDAWYHTKCCSISNESYNTLANSSCSW 129


>SB_29875| Best HMM Match : PHD (HMM E-Value=0.0014)
          Length = 598

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 22  WCEGWSDKLCCSIFNWSAISTKTASKTW 105
           +C+ W    CCSI N S  +   +S +W
Sbjct: 115 YCDAWYHTKCCSISNESYNTLANSSCSW 142


>SB_13736| Best HMM Match : PHD (HMM E-Value=0.001)
          Length = 226

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 22  WCEGWSDKLCCSIFNWSAISTKTASKTW 105
           +C+ W    CCSI N S  +   +S +W
Sbjct: 71  YCDAWYHTKCCSISNESYNTLANSSCSW 98


>SB_53096| Best HMM Match : PHD (HMM E-Value=0.001)
          Length = 623

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 22  WCEGWSDKLCCSIFNWSAISTKTASKTW 105
           +C+ W    CCSI N S  +   +S +W
Sbjct: 71  YCDAWYHTKCCSISNESYNTLANSSCSW 98


>SB_49455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 897

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 22  WCEGWSDKLCCSIFNWSAISTKTASKTW 105
           +C+ W    CCSI N S  +   +S +W
Sbjct: 370 YCDAWYHTKCCSISNESYNTLANSSCSW 397


>SB_46260| Best HMM Match : CUB (HMM E-Value=7.3e-24)
          Length = 830

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 22  WCEGWSDKLCCSIFNWSAISTKTASKTW 105
           +C+ W    CCSI N S  +   +S +W
Sbjct: 656 YCDAWYHTKCCSISNESYNTLANSSCSW 683


>SB_29292| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 717

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 22  WCEGWSDKLCCSIFNWSAISTKTASKTW 105
           +C+ W    CCSI N S  +   +S +W
Sbjct: 195 YCDAWYHTKCCSISNESYNTLANSSCSW 222


>SB_12041| Best HMM Match : PHD (HMM E-Value=0.001)
          Length = 560

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 22  WCEGWSDKLCCSIFNWSAISTKTASKTW 105
           +C+ W    CCSI N S  +   +S +W
Sbjct: 34  YCDAWYHTKCCSISNESYNTLANSSCSW 61


>SB_6963| Best HMM Match : PHD (HMM E-Value=0.054)
          Length = 146

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 22  WCEGWSDKLCCSIFNWSAISTKTASKTW 105
           +C+ W    CCSI N S  +   +S +W
Sbjct: 115 YCDAWYHTKCCSISNESYNTLANSSCSW 142


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,809,653
Number of Sequences: 59808
Number of extensions: 256022
Number of successful extensions: 687
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 994359969
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)