Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0412
         (473 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) riboso...    74   6e-14
At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S...    74   6e-14

>At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) ribosomal
           protein L5, rice
          Length = 301

 Score = 73.7 bits (173), Expect = 6e-14
 Identities = 39/85 (45%), Positives = 48/85 (56%)
 Frame = +2

Query: 2   SHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGP 181
           +HELP+YG+ VGLTNYAAAY TG                          +++VEP D+  
Sbjct: 80  AHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDFSVEPTDS-R 138

Query: 182 GAFRCYLDVGLARTTTGARVFGAMR 256
             FR  LDVGL RTTTG RVFGA++
Sbjct: 139 RPFRALLDVGLIRTTTGNRVFGALK 163



 Score = 55.2 bits (127), Expect = 2e-08
 Identities = 21/38 (55%), Positives = 32/38 (84%)
 Frame = +1

Query: 253 EGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFG 366
           +GA+DGGL++PHS KRF G+  E+K+ +AE+HR +I+G
Sbjct: 163 KGALDGGLDIPHSDKRFAGFHKENKQLDAEIHRNYIYG 200



 Score = 38.7 bits (86), Expect = 0.002
 Identities = 16/35 (45%), Positives = 24/35 (68%)
 Frame = +3

Query: 369 HVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIE 473
           HV+ YM+ L +D+ +  +  FS YIK GV A++IE
Sbjct: 202 HVSNYMKLLGEDEPEKLQTHFSAYIKKGVEAESIE 236


>At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S
           ribosomal protein L5 GB:P49625 from [Oryza sativa]
          Length = 301

 Score = 73.7 bits (173), Expect = 6e-14
 Identities = 39/85 (45%), Positives = 48/85 (56%)
 Frame = +2

Query: 2   SHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGP 181
           +HELP+YG+ VGLTNYAAAY TG                          +++VEP D+  
Sbjct: 80  AHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDFSVEPTDS-R 138

Query: 182 GAFRCYLDVGLARTTTGARVFGAMR 256
             FR  LDVGL RTTTG RVFGA++
Sbjct: 139 RPFRALLDVGLIRTTTGNRVFGALK 163



 Score = 55.2 bits (127), Expect = 2e-08
 Identities = 21/38 (55%), Positives = 32/38 (84%)
 Frame = +1

Query: 253 EGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFG 366
           +GA+DGGL++PHS KRF G+  E+K+ +AE+HR +I+G
Sbjct: 163 KGALDGGLDIPHSDKRFAGFHKENKQLDAEIHRNYIYG 200



 Score = 38.7 bits (86), Expect = 0.002
 Identities = 16/35 (45%), Positives = 24/35 (68%)
 Frame = +3

Query: 369 HVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIE 473
           HV+ YM+ L +D+ +  +  FS YIK GV A++IE
Sbjct: 202 HVSNYMKLLGEDEPEKLQTHFSAYIKKGVEAESIE 236


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,461,330
Number of Sequences: 28952
Number of extensions: 173118
Number of successful extensions: 446
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 811731120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)