Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0409
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    32   0.069
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    29   0.64 
SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated |Schizosaccharom...    25   7.9  
SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   7.9  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    25   7.9  

>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 32.3 bits (70), Expect = 0.069
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 190 SGCGRCRVWSMFVRYVRFSELVFNIMRPQKLYIF 291
           +GCG+  VW  +VR+V F E          LY++
Sbjct: 108 NGCGKSYVWPSYVRFVDFDERYTRFANKYSLYLY 141


>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -2

Query: 373 ARKIRGRPENAGPDPVRNVRRFSRV 299
           AR I GRPEN G   ++N+ R S+V
Sbjct: 214 ARTIPGRPENGGNCDIKNLSRGSKV 238


>SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 233

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 227 TNIDQTRHRPHPLPVQTRHAPV 162
           +N+D  +  PHP P Q    PV
Sbjct: 100 SNLDSVKSLPHPWPFQKESRPV 121


>SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 215

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 437 RSAQNWHGQGESDCLIKTKHCDGPAGVDA 523
           R   N  G+ ++DCLI    C    G+D+
Sbjct: 25  RGTLNSKGKNDNDCLIMCMRCRKVKGIDS 53


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -2

Query: 619 GYLKRVIVTPAVYPRLLEFLHVDIQST 539
           G+++R+ V    YP LLE+L++ + S+
Sbjct: 76  GFIERISVILRDYPDLLEYLNIFLPSS 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,901,783
Number of Sequences: 5004
Number of extensions: 59100
Number of successful extensions: 149
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)