Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0409
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0098 + 25560158-25560925 32 0.50
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309... 31 0.88
02_05_0110 + 25914110-25915006,25915726-25915797,25916411-259166... 30 2.0
02_03_0076 - 14861337-14861974,14862008-14862119,14862150-14863580 30 2.0
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729... 29 2.7
06_01_0268 + 1989069-1989293,1989938-1990020,1990136-1990357,199... 29 4.7
04_03_0732 + 19095320-19095827,19095848-19096621,19096863-190969... 29 4.7
03_05_0379 + 23628200-23628366,23629074-23629133,23630177-236302... 28 6.2
01_01_1168 - 9305084-9307172,9307751-9308460,9308624-9308821 28 6.2
12_02_0854 + 23697826-23698033,23699111-23699276,23699430-236994... 28 8.2
11_08_0081 - 28216179-28216381,28216590-28216657,28217131-282172... 28 8.2
05_04_0162 + 18645459-18645827,18645934-18646149,18646224-186462... 28 8.2
01_01_1167 - 9301114-9301490,9302251-9302808,9303054-9303093 28 8.2
>05_06_0098 + 25560158-25560925
Length = 255
Score = 31.9 bits (69), Expect = 0.50
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = -1
Query: 206 HRPHPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALHLGDLLRIWVRTGATSP 27
HRP P P + P L +P + V I P PT F + + ++++ + T P
Sbjct: 31 HRPPPPPPSSSSQPALPPSPRTVVPRTIDTTPFPTTFVQADTASFKQVVQMLTGSDTTPP 90
>03_04_0090 +
17228253-17228403,17229062-17229129,17229238-17230902,
17231002-17231143,17231648-17232399
Length = 925
Score = 31.1 bits (67), Expect = 0.88
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
Frame = -1
Query: 227 TNIDQTRH------RPHPLPVQTRHAPVLRANP 147
T IDQ H + H +PVQ H+PVL+ NP
Sbjct: 324 TQIDQPSHCQRIKNQDHSVPVQKNHSPVLKTNP 356
>02_05_0110 +
25914110-25915006,25915726-25915797,25916411-25916699,
25916864-25916949,25917267-25917490,25917674-25917740,
25917830-25917889,25917995-25918078,25918475-25918555
Length = 619
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -2
Query: 637 LDDEAFGYL-KRVIVTPAVYPRLLEFLHVDIQSTG 536
LDDE YL R V + RLL+F++VD STG
Sbjct: 279 LDDEDISYLTNRAAVYIEMGKRLLKFIYVDPSSTG 313
>02_03_0076 - 14861337-14861974,14862008-14862119,14862150-14863580
Length = 726
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = -3
Query: 567 NFFTLTFRALGRNHIASTPAGPSQCFVLIRQSDSPCPC 454
NF R L + HIAS +GP +C + C C
Sbjct: 225 NFLPSCVRCLDKGHIASNCSGPVRCHSCLEAGHMSCFC 262
>12_01_0796 +
7292523-7292783,7292963-7293018,7295274-7295331,
7295777-7295843,7296461-7296516,7296638-7296691,
7296836-7296961
Length = 225
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 197 HPLPVQTRHAPVLRANPYSEVTDPICRLPL 108
H L + RH P L+A P S + C+LPL
Sbjct: 107 HSLIIPKRHFPSLQATPPSVIAAICCKLPL 136
>06_01_0268 +
1989069-1989293,1989938-1990020,1990136-1990357,
1990434-1990621,1990711-1990835,1990988-1991039,
1991585-1991874,1992229-1992307,1992527-1992657
Length = 464
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -1
Query: 191 LPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEAL 78
+P Q + A + A+P + V C LP P+LF L L
Sbjct: 292 IPYQFQEATSILASPLAHVPASSCPLPAPSLFSSLPLL 329
>04_03_0732 +
19095320-19095827,19095848-19096621,19096863-19096906,
19097191-19097250
Length = 461
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1
Query: 203 RPHPLPVQTRHAPVLRANPYSEVTDP 126
RP+PL V +RHA VL + V DP
Sbjct: 133 RPNPLDVVSRHAGVLSRGDHCLVVDP 158
>03_05_0379 +
23628200-23628366,23629074-23629133,23630177-23630209,
23630253-23630665,23631522-23632008,23632623-23633334
Length = 623
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -3
Query: 519 STPAGPSQCFVLIRQSDSPCPC 454
S P G S CF + SPCPC
Sbjct: 314 SCPCGASFCFGCAAPAHSPCPC 335
>01_01_1168 - 9305084-9307172,9307751-9308460,9308624-9308821
Length = 998
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = -2
Query: 634 DDEAFGYLKRVIVTPAVYPRLLEFLHVDIQSTGQKSHCVNTRR 506
D++ G+L+R ++ P R + L V++QS ++ V+ RR
Sbjct: 99 DEDLAGWLRRTVLRPLTTLRAMYKLAVEVQSLKARALMVSERR 141
>12_02_0854 +
23697826-23698033,23699111-23699276,23699430-23699466,
23699531-23700145
Length = 341
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/25 (60%), Positives = 16/25 (64%)
Frame = -2
Query: 229 ARTSTRPGTGRIRFPSKPDTPRSSE 155
A TST PG GR R PS P TP S+
Sbjct: 16 AATSTDPGRGRKRPPS-PSTPTPSD 39
>11_08_0081 -
28216179-28216381,28216590-28216657,28217131-28217298,
28217370-28217436,28217509-28217576,28218256-28218420,
28218490-28218556,28218629-28218696,28219855-28219992,
28220189-28220353,28221227-28221304,28221380-28221532,
28222753-28222823,28223077-28223203,28223306-28223565,
28223679-28223842,28224287-28224450,28225873-28226159
Length = 826
Score = 27.9 bits (59), Expect = 8.2
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = -1
Query: 245 LKRT*RTNIDQTRHRPHPLPVQTRHAPVLRANPYSEVTDP--ICRLPLPTLFYRLEALHL 72
+K + N+D RP P PV LRA PY P + + L + L ++++
Sbjct: 1 MKPSPAANLDVRVERPRPPPVHPHRPGSLRARPYYRRWTPWIVAAIALSCVVVFLVSMYV 60
Query: 71 GDLLR 57
D R
Sbjct: 61 NDCPR 65
>05_04_0162 +
18645459-18645827,18645934-18646149,18646224-18646278,
18646545-18646672,18647134-18647217,18648742-18648867,
18648949-18649086
Length = 371
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -2
Query: 217 TRPGTGRIRFPSKPDTPRSSEPILIPKLR 131
TRP TG+ P K D RS + I KLR
Sbjct: 108 TRPRTGKAALPLKRDRTRSKRFLEIQKLR 136
>01_01_1167 - 9301114-9301490,9302251-9302808,9303054-9303093
Length = 324
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = -2
Query: 679 GQWESR*SIHARH*LDDEAF--GYLKRVIVTPAVYPRLLEFLHVDIQSTGQKSHCVNTRR 506
G W R RH DE G+L+R ++ P R + L +D+QS ++ V+ RR
Sbjct: 35 GFWHHR----GRHYRGDEGLVAGWLRRTVIQPLETLRAMHKLALDVQSLKARALKVSERR 90
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,199,689
Number of Sequences: 37544
Number of extensions: 441822
Number of successful extensions: 1302
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1302
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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