Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0409
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z81119-8|CAB03340.1|  504|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U23529-9|AAL32210.1|  713|Caenorhabditis elegans G-protein-linke...    29   3.2  
U23529-8|AAL32209.1|  682|Caenorhabditis elegans G-protein-linke...    29   3.2  
AF117300-1|AAF26201.1|  713|Caenorhabditis elegans G protein-lin...    29   3.2  
AF075245-1|AAD13747.1|  682|Caenorhabditis elegans G protein-lin...    29   3.2  
AF099919-3|AAC68801.2|  862|Caenorhabditis elegans Hypothetical ...    29   4.2  
AF039047-11|AAB94230.1|  354|Caenorhabditis elegans Prion-like-(...    29   4.2  
AC024799-9|AAK72312.1|  293|Caenorhabditis elegans Hypothetical ...    27   9.8  

>U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical protein
            C25H3.8 protein.
          Length = 2148

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = -1

Query: 236  T*RTNIDQTRHRPHPLPVQ---TRHAPVLRANPYSEVTDPI 123
            T +++ID T H PHP+ VQ   T+   V+   P   V+ P+
Sbjct: 904  TLKSSIDITNHLPHPIAVQTEGTKGGEVMSVEPNGVVSVPL 944


>Z81119-8|CAB03340.1|  504|Caenorhabditis elegans Hypothetical
           protein T10H4.10 protein.
          Length = 504

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +3

Query: 297 DTRENRLTFRTGSGPAFSGLPRIFLAVRSCRFRFVRDRHDSVRPPFN 437
           D    +L  R   G   +G   IF  VR    RF++ R D++  PFN
Sbjct: 200 DPEFEKLVSRLAKGFENTGFLDIFCPVRILESRFLKWRQDTIFEPFN 246


>U23529-9|AAL32210.1|  713|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 1, isoform b protein.
          Length = 713

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -2

Query: 256 KLTR*NEHNARTSTRPGTGRIRFPSKPDT 170
           +LT  NE+   TS++PG  R+  P+K DT
Sbjct: 556 QLTVNNENRGETSSQPGRDRLAPPNKTDT 584


>U23529-8|AAL32209.1|  682|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 1, isoform a protein.
          Length = 682

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -2

Query: 256 KLTR*NEHNARTSTRPGTGRIRFPSKPDT 170
           +LT  NE+   TS++PG  R+  P+K DT
Sbjct: 525 QLTVNNENRGETSSQPGRDRLAPPNKTDT 553


>AF117300-1|AAF26201.1|  713|Caenorhabditis elegans G protein-linked
           acetylcholinereceptor GAR-1a protein.
          Length = 713

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -2

Query: 256 KLTR*NEHNARTSTRPGTGRIRFPSKPDT 170
           +LT  NE+   TS++PG  R+  P+K DT
Sbjct: 556 QLTVNNENRGETSSQPGRDRLAPPNKTDT 584


>AF075245-1|AAD13747.1|  682|Caenorhabditis elegans G protein-linked
           acetylcholinereceptor GAR-1b protein.
          Length = 682

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -2

Query: 256 KLTR*NEHNARTSTRPGTGRIRFPSKPDT 170
           +LT  NE+   TS++PG  R+  P+K DT
Sbjct: 525 QLTVNNENRGETSSQPGRDRLAPPNKTDT 553


>AF099919-3|AAC68801.2|  862|Caenorhabditis elegans Hypothetical
           protein F40G9.9 protein.
          Length = 862

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = -3

Query: 165 GPQSQSLFRSYGSNLPTSLTYIILSTRGSSPWRPAAD--MGTNRRDFSTYIPHL 10
           GP    +  S  S+  TS  ++ +  R  S  RP ++  +  N +DF+T +PH+
Sbjct: 84  GPDGSLILWSINSSFKTS--HLAIDKRLRSIHRPTSEIHLNINSKDFTTCLPHI 135


>AF039047-11|AAB94230.1|  354|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 51
           protein.
          Length = 354

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = -1

Query: 221 IDQTRHRPHPLPVQTRHAP--VLRANPYSEVTDPICRLPLPTLFYRLEALHLGD 66
           +D   + P P P Q  H P   +R NP      P+ + P+  L   L A H+GD
Sbjct: 53  VDLESNAPPPAPRQQHHVPPSAVRPNPMPP-QRPVAQQPVRAL-SALHAAHIGD 104


>AC024799-9|AAK72312.1|  293|Caenorhabditis elegans Hypothetical
           protein Y49C4A.1 protein.
          Length = 293

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = +1

Query: 169 ACRVWTGSGCGRC--RVWSMFVRYVRFSELV-FNIMRPQKLYIFN 294
           ACR + G    +C  + WSM  R + FS +V F+IM   KLY+ N
Sbjct: 157 ACRFF-GCAINKCFFKFWSMH-RGIIFSVMVVFSIMISVKLYVLN 199


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,315,579
Number of Sequences: 27780
Number of extensions: 345336
Number of successful extensions: 923
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)