Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0407
         (498 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomy...    52   5e-08
SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy...    49   4e-07
SPAC212.08c |||GPI anchored protein |Schizosaccharomyces pombe|c...    25   6.3  
SPAC750.07c |||S. pombe specific GPI anchored protein family 1|S...    25   6.3  

>SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score = 52.0 bits (119), Expect = 5e-08
 Identities = 21/42 (50%), Positives = 31/42 (73%)
 Frame = +2

Query: 332 MGAFLNKPETKKYNESGEGNGLRYGVASMQGWRVEMEDAHHA 457
           MG  L++P T+K++ +G    + YG++SMQGWR+ MEDAH A
Sbjct: 1   MGQTLSEPVTEKHSVNGSNEFVLYGLSSMQGWRISMEDAHSA 42


>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 370

 Score = 48.8 bits (111), Expect = 4e-07
 Identities = 21/42 (50%), Positives = 28/42 (66%)
 Frame = +2

Query: 332 MGAFLNKPETKKYNESGEGNGLRYGVASMQGWRVEMEDAHHA 457
           MG  L++P   K++ SG    L +GV+ MQGWR+ MEDAH A
Sbjct: 1   MGQTLSEPVLDKHSSSGGDRWLHFGVSHMQGWRISMEDAHCA 42


>SPAC212.08c |||GPI anchored protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 278

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = -3

Query: 406 AIAKTVSFPALVIFFGLGLI*KRPHT*S*FTVTLIAHNFHTIRHLDSRRVRNVKDELK 233
           A A  V++   +I  G+GLI ++ +       TL+AH F T   ++    + V D LK
Sbjct: 18  ATAFYVTWQGRLICAGVGLILEQAYEGGQMFNTLMAHCFETYNGVEKSGTQCVADWLK 75


>SPAC750.07c |||S. pombe specific GPI anchored protein family
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 123

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = -3

Query: 406 AIAKTVSFPALVIFFGLGLI*KRPHT*S*FTVTLIAHNFHTIRHLDSRRVRNVKDELK 233
           A A  V++   +I  G+GLI ++ +       TL+AH F T   ++    + V D LK
Sbjct: 18  ATAFYVTWQGRLICAGVGLILEQAYEGGQMFNTLMAHCFETYNGVEKSGTQCVADWLK 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,702,150
Number of Sequences: 5004
Number of extensions: 29674
Number of successful extensions: 60
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)