Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0407
(498 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0254 - 21872694-21872873,21872992-21873046,21873548-218736... 60 1e-09
02_01_0598 + 4440018-4440070,4440627-4440693,4440794-4440926,444... 59 2e-09
06_03_0954 - 26281937-26282143,26282232-26282286,26282430-262824... 58 3e-09
02_04_0496 + 23446039-23446964,23452755-23452845,23452946-234529... 39 0.002
02_04_0485 + 23338980-23339187,23339277-23339305,23339962-233400... 38 0.006
02_04_0482 + 23291986-23292181,23292289-23292317,23293500-232936... 38 0.006
02_04_0489 + 23404757-23404812,23406170-23406296,23406418-234064... 37 0.008
04_04_0406 + 24978845-24978970,24979073-24979142,24979541-249795... 34 0.055
02_04_0555 - 23840634-23841035,23841388-23841501,23841742-238418... 33 0.096
02_04_0554 - 23831212-23832163,23833173-23833438,23833694-238337... 33 0.096
02_04_0491 + 23417790-23417859,23418550-23418773,23418951-234189... 30 1.2
02_04_0550 - 23795957-23796154,23796596-23796650,23797324-237973... 29 2.1
09_02_0454 + 9514706-9515776 29 2.7
06_01_1137 + 9412230-9412378,9412549-9412634,9413417-9413496,941... 28 4.8
05_05_0278 - 23786507-23786875,23787191-23787315,23787499-237876... 28 4.8
>09_06_0254 -
21872694-21872873,21872992-21873046,21873548-21873600,
21873683-21873759,21873842-21873965,21874050-21874175,
21874861-21875011,21875112-21875220,21875791-21875854,
21876334-21876450
Length = 351
Score = 59.7 bits (138), Expect = 1e-09
Identities = 25/42 (59%), Positives = 32/42 (76%)
Frame = +2
Query: 332 MGAFLNKPETKKYNESGEGNGLRYGVASMQGWRVEMEDAHHA 457
MG +L+ P+T+KY+ G + LRYG+ASMQGWR MEDAH A
Sbjct: 1 MGVYLSTPKTEKYSGEGGNDRLRYGLASMQGWRTTMEDAHTA 42
>02_01_0598 + 4440018-4440070,4440627-4440693,4440794-4440926,
4441075-4441120,4442470-4442521,4442601-4442753,
4443338-4443457,4443549-4443714,4443822-4443934,
4444049-4444120,4444992-4445213,4445270-4445317,
4445639-4445697,4445809-4445887,4445982-4446119,
4446327-4446551,4446643-4447430,4447548-4447723,
4447911-4448169,4448646-4448707,4451055-4451212,
4451618-4451743,4452197-4452260,4452386-4452494,
4452607-4452760,4453055-4453178,4453257-4453333,
4453442-4453494,4453673-4453727,4453833-4454021
Length = 1379
Score = 59.3 bits (137), Expect = 2e-09
Identities = 24/49 (48%), Positives = 36/49 (73%)
Frame = +2
Query: 311 YGELGLSMGAFLNKPETKKYNESGEGNGLRYGVASMQGWRVEMEDAHHA 457
+ L ++MG +L+ P+T K++E GE + L+ G++SMQGWR MEDAH A
Sbjct: 1060 FAYLLINMGIYLSTPKTDKFSEDGENDKLKLGLSSMQGWRANMEDAHSA 1108
>06_03_0954 -
26281937-26282143,26282232-26282286,26282430-26282482,
26282587-26282663,26282734-26282857,26282947-26283072,
26283463-26283616,26283709-26283817,26283911-26283974,
26284782-26284898
Length = 361
Score = 58.4 bits (135), Expect = 3e-09
Identities = 23/42 (54%), Positives = 33/42 (78%)
Frame = +2
Query: 332 MGAFLNKPETKKYNESGEGNGLRYGVASMQGWRVEMEDAHHA 457
MG +L+ P+T+K +E GE + L++G++SMQGWR MEDAH A
Sbjct: 1 MGVYLSTPKTEKLSEDGENDKLKFGLSSMQGWRATMEDAHSA 42
>02_04_0496 +
23446039-23446964,23452755-23452845,23452946-23452996,
23453080-23453206,23453390-23453425,23453443-23453473,
23453488-23453576,23454341-23454462,23455601-23455778,
23458343-23458470,23458592-23458658,23459167-23459272,
23459365-23459473,23459965-23460084,23460187-23460220,
23460471-23460547,23460640-23460692,23460847-23460898,
23461270-23461767
Length = 964
Score = 39.1 bits (87), Expect = 0.002
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +2
Query: 353 PETKKYNESGEGNGLRYGVASMQGWRVEMEDAHHA 457
P K+ + E + ++Y V+SMQGW +MEDAH A
Sbjct: 562 PVESKFTDEKENDRIKYVVSSMQGWGEKMEDAHAA 596
>02_04_0485 + 23338980-23339187,23339277-23339305,23339962-23340064,
23340311-23340482,23340880-23340940,23341257-23341389,
23341938-23342208,23342595-23342734,23342912-23342998,
23343078-23343586,23343671-23344488,23344522-23344720,
23345552-23345696,23345728-23345782,23347652-23347778,
23347867-23347936,23348448-23348553,23348636-23348747,
23349243-23349365,23349468-23349627,23349751-23349827,
23349925-23349977,23350151-23350205,23350500-23351174
Length = 1495
Score = 37.5 bits (83), Expect = 0.006
Identities = 20/50 (40%), Positives = 28/50 (56%)
Frame = +2
Query: 308 RYGELGLSMGAFLNKPETKKYNESGEGNGLRYGVASMQGWRVEMEDAHHA 457
R + +MG L P K+ E + ++Y V+SMQGW +MEDAH A
Sbjct: 975 RQSKASSAMGNSL--PVESKFTFEEENDRIKYVVSSMQGWGEKMEDAHAA 1022
>02_04_0482 + 23291986-23292181,23292289-23292317,23293500-23293602,
23293855-23293979,23294788-23294920,23295468-23295739,
23295806-23295873,23296126-23296265,23296443-23296529,
23296610-23297118,23297203-23298020,23298054-23298252,
23299084-23299228,23299260-23299314,23301184-23301310,
23301399-23301468,23301980-23302085,23302168-23302279,
23302775-23302897,23303000-23303159,23303283-23303359,
23303457-23303509,23303683-23303737,23304032-23304706
Length = 1478
Score = 37.5 bits (83), Expect = 0.006
Identities = 20/50 (40%), Positives = 28/50 (56%)
Frame = +2
Query: 308 RYGELGLSMGAFLNKPETKKYNESGEGNGLRYGVASMQGWRVEMEDAHHA 457
R + +MG L P K+ E + ++Y V+SMQGW +MEDAH A
Sbjct: 958 RQSKASSAMGNSL--PVESKFTFEEENDRIKYVVSSMQGWGEKMEDAHAA 1005
>02_04_0489 +
23404757-23404812,23406170-23406296,23406418-23406487,
23406997-23407102,23407185-23407296,23407792-23407914,
23408017-23408176,23408300-23408376,23408474-23408526,
23408700-23408754,23409049-23409683,23410412-23410733,
23410838-23411146,23411468-23411470
Length = 735
Score = 37.1 bits (82), Expect = 0.008
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +2
Query: 353 PETKKYNESGEGNGLRYGVASMQGWRVEMEDAHHA 457
P K+ E + ++Y V+SMQGW +MEDAH A
Sbjct: 30 PVESKFTFEEENDRIKYVVSSMQGWGEKMEDAHAA 64
>04_04_0406 +
24978845-24978970,24979073-24979142,24979541-24979556,
24979813-24979930,24980015-24980137,24980249-24980408,
24980470-24980546,24980635-24980687,24981263-24981317,
24981664-24981858
Length = 330
Score = 34.3 bits (75), Expect = 0.055
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +2
Query: 344 LNKPETKKYNESGEGNGLRYGVASMQGWRVEMEDAH 451
L P+ K SG L Y ++MQG+R MEDAH
Sbjct: 8 LQVPDITKSTHSGGNTVLAYASSAMQGYRSTMEDAH 43
>02_04_0555 -
23840634-23841035,23841388-23841501,23841742-23841844,
23842415-23842467,23842544-23842644,23842702-23842879,
23842998-23843120,23843515-23843656,23843854-23843959,
23844236-23844305,23844430-23844588,23845229-23845329,
23845410-23845503
Length = 581
Score = 33.5 bits (73), Expect = 0.096
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = +2
Query: 329 SMGAFLN--KPETKKYNESGEGNGLRYGVASMQGWRVEMEDA 448
+MGA + +P T K GE + ++Y ++MQG R+ M+DA
Sbjct: 77 AMGASTSTKRPLTSKVTNEGENDRVKYASSAMQGLRMSMQDA 118
>02_04_0554 -
23831212-23832163,23833173-23833438,23833694-23833748,
23834384-23834436,23834512-23834588,23834730-23834862,
23834958-23835098,23835840-23835960,23836137-23836242,
23836523-23836592,23836716-23836885,23837253-23837277,
23837662-23837777,23838926-23839217
Length = 858
Score = 33.5 bits (73), Expect = 0.096
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +2
Query: 311 YGELGLSMGAFLNKPETKKYNESGEGNGLRYGVASMQGWRVEMEDA 448
+ + L+MGA + T K GE ++Y ++MQG+ M+DA
Sbjct: 156 FRKASLAMGASASSSVTSKLTNDGENQRVKYASSTMQGYCPTMQDA 201
>02_04_0491 +
23417790-23417859,23418550-23418773,23418951-23418964,
23419842-23419968,23420092-23420161,23420661-23420766,
23420849-23420966,23421457-23421576,23421679-23421859,
23421954-23422030,23422117-23422169,23422336-23422387,
23422683-23423885
Length = 804
Score = 29.9 bits (64), Expect = 1.2
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +2
Query: 353 PETKKYNESGEGNGLRYGVASMQGWRVEMEDAHHA 457
P K E + ++Y V+SMQG +MEDAH A
Sbjct: 114 PVESKVTVEEENDRIKYIVSSMQGLGHKMEDAHAA 148
>02_04_0550 -
23795957-23796154,23796596-23796650,23797324-23797376,
23797453-23797529,23797613-23797736,23797848-23797964,
23798439-23798547,23798724-23798829,23799043-23799106,
23799214-23799333
Length = 340
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 332 MGAFLNKP-ETKKYNESGEGNGLRYGVASMQGWRVEMEDA 448
MGA ++P E + GE + ++Y + QG+R MEDA
Sbjct: 1 MGASPSRPLEQSPSSSEGENHRVKYASYTTQGFRPHMEDA 40
>09_02_0454 + 9514706-9515776
Length = 356
Score = 28.7 bits (61), Expect = 2.7
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Frame = +2
Query: 308 RYGELGLSMGAFLNKPETKKYNESGEGNGL-----RYGVASMQGWRVEMEDA 448
R+ + G + T+K SG GL R+G AS+ G R EMEDA
Sbjct: 37 RWNATATAAGVAAEEAATRKRRASGGEAGLVVVAKRHGAASVAGRRREMEDA 88
>06_01_1137 +
9412230-9412378,9412549-9412634,9413417-9413496,
9413826-9413881,9414038-9414086,9414692-9414841,
9414993-9415088,9415442-9415555,9415655-9415785,
9416171-9416408,9416603-9416656,9417100-9417117,
9417906-9418722,9418797-9418846
Length = 695
Score = 27.9 bits (59), Expect = 4.8
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Frame = +2
Query: 317 ELGLSMGAFLNKPETKK--YNESGEGNGLRYGVAS 415
+LG + G+F+NK + KK Y E G+ +R+G +S
Sbjct: 92 DLGSTHGSFINKTQVKKKIYVEIHVGDVIRFGQSS 126
>05_05_0278 -
23786507-23786875,23787191-23787315,23787499-23787664,
23787844-23787979,23788286-23788378,23788505-23788611,
23788719-23788905,23789616-23789722,23789811-23790065,
23791241-23791306,23791363-23791401
Length = 549
Score = 27.9 bits (59), Expect = 4.8
Identities = 21/71 (29%), Positives = 28/71 (39%)
Frame = +1
Query: 100 IINLHYKRNRQAALKCLGLEEPLLAYKCNVKIV*RDCVRSYHSDASTRLLRYVRDVNLSA 279
I+NL + R A LKC + P A C C RSYH + L DV+
Sbjct: 167 IVNLELEIKRAAKLKCKRCKLPGAALGCYY----TKCNRSYHVPCAMMTLNCRWDVDNGC 222
Query: 280 *WCGNYVRLTL 312
C + + L
Sbjct: 223 VMCPEHATMPL 233
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,721,550
Number of Sequences: 37544
Number of extensions: 186091
Number of successful extensions: 356
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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