Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0407
         (498 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53776| Best HMM Match : Pkinase_Tyr (HMM E-Value=4.5e-12)           28   4.9  
SB_22660| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_30078| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_53776| Best HMM Match : Pkinase_Tyr (HMM E-Value=4.5e-12)
          Length = 640

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 295 NFHTIRHLDSRRVRNVKDELKHHCD 221
           N H +R LD   ++  K+ELKH  D
Sbjct: 286 NLHELRRLDEELIQRRKEELKHARD 310


>SB_22660| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1179

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 362 WSRAYLKTPPYLVLVHRNV 306
           WS+ Y++  PYL+L+ + V
Sbjct: 179 WSKPYIEAAPYLILIFKQV 197


>SB_30078| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 528

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/47 (23%), Positives = 22/47 (46%)
 Frame = -3

Query: 316 TVTLIAHNFHTIRHLDSRRVRNVKDELKHHCDTISRNHVKLFLRYTY 176
           T+ +IAH +H    + S     +     HH  +IS + + + + + Y
Sbjct: 330 TIIIIAHQYHYYPSISSSSTNIIIIHQYHHHPSISSSPINIIIAHQY 376


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,847,701
Number of Sequences: 59808
Number of extensions: 226469
Number of successful extensions: 430
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)