Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0407
         (498 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73973-3|CAA98265.1|  468|Caenorhabditis elegans Hypothetical pr...    71   6e-13
U00051-13|AAA91358.1|  491|Caenorhabditis elegans Hypothetical p...    60   9e-10
Z46343-1|CAA86456.2|  356|Caenorhabditis elegans Hypothetical pr...    44   6e-05
Z73973-4|CAE54908.1|  367|Caenorhabditis elegans Hypothetical pr...    36   0.016
Z83104-5|CAC35810.1|  570|Caenorhabditis elegans Hypothetical pr...    27   7.6  
U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crum...    27   7.6  
AB012700-1|BAA89795.1|  570|Caenorhabditis elegans FLR-4 protein.      27   7.6  

>Z73973-3|CAA98265.1|  468|Caenorhabditis elegans Hypothetical
           protein F25D1.1a protein.
          Length = 468

 Score = 70.5 bits (165), Expect = 6e-13
 Identities = 29/46 (63%), Positives = 39/46 (84%)
 Frame = +2

Query: 329 SMGAFLNKPETKKYNESGEGNGLRYGVASMQGWRVEMEDAHHAHSL 466
           +MGAFL+KP+T K N  GEGNG+RYG++SMQGWR+ MED+H A ++
Sbjct: 83  TMGAFLDKPKTDKTNVHGEGNGIRYGMSSMQGWRICMEDSHIAEAI 128


>U00051-13|AAA91358.1|  491|Caenorhabditis elegans Hypothetical
           protein F42G9.1a protein.
          Length = 491

 Score = 60.1 bits (139), Expect = 9e-10
 Identities = 25/41 (60%), Positives = 29/41 (70%)
 Frame = +2

Query: 332 MGAFLNKPETKKYNESGEGNGLRYGVASMQGWRVEMEDAHH 454
           MGA+LNKP  +K  E G GNGL Y   +MQGWRV  EDAH+
Sbjct: 1   MGAYLNKPIIEKEKEEGSGNGLSYACTTMQGWRVNQEDAHN 41


>Z46343-1|CAA86456.2|  356|Caenorhabditis elegans Hypothetical
           protein T23F11.1 protein.
          Length = 356

 Score = 44.0 bits (99), Expect = 6e-05
 Identities = 23/46 (50%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = +2

Query: 332 MGAFLNKPETKKYNESGEGNGLRYGVASMQGWRVEMEDAH-HAHSL 466
           MG  L++P TKK + S        G + MQGWRV+MEDAH H  SL
Sbjct: 1   MGQTLSEPVTKKESASCANENYLVGSSCMQGWRVDMEDAHTHLLSL 46


>Z73973-4|CAE54908.1|  367|Caenorhabditis elegans Hypothetical
           protein F25D1.1b protein.
          Length = 367

 Score = 35.9 bits (79), Expect = 0.016
 Identities = 13/22 (59%), Positives = 19/22 (86%)
 Frame = +2

Query: 401 YGVASMQGWRVEMEDAHHAHSL 466
           YG++SMQGWR+ MED+H A ++
Sbjct: 6   YGMSSMQGWRICMEDSHIAEAI 27


>Z83104-5|CAC35810.1|  570|Caenorhabditis elegans Hypothetical
           protein F09B12.6 protein.
          Length = 570

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = -3

Query: 274 LDSRRVRNVKDELKHHCDTISRNHVKLFLRYTYRQARVLPNPNTLMQLVCF 122
           ++S     V+ ELK      S N +++F+   Y  +R+L   N L + +C+
Sbjct: 377 IESMEYAAVRKELKKRSKPKSNNIMQIFVASGYYLSRILYFLNILTRSICY 427


>U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crumbs
           homolog protein 1 protein.
          Length = 1722

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -3

Query: 319 FTVTLIAHNFHTIRHLDSRRVRNVKDELKHHCDTISRNHVKLFLRYTYRQ 170
           + V  IA    T+R+    R R ++   K+  D    +HV++FL  T RQ
Sbjct: 813 YLVVKIAGGLITVRYRTGGR-REIEFSSKNRVDDNQEHHVQIFLDKTTRQ 861


>AB012700-1|BAA89795.1|  570|Caenorhabditis elegans FLR-4 protein.
          Length = 570

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = -3

Query: 274 LDSRRVRNVKDELKHHCDTISRNHVKLFLRYTYRQARVLPNPNTLMQLVCF 122
           ++S     V+ ELK      S N +++F+   Y  +R+L   N L + +C+
Sbjct: 377 IESMEYAAVRKELKKRSKPKSNNIMQIFVASGYYLSRILYFLNILTRSICY 427


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,379,262
Number of Sequences: 27780
Number of extensions: 166437
Number of successful extensions: 370
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)