Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0407
         (498 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.3  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   7.1  
AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-lik...    21   7.1  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   7.1  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   9.4  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = -2

Query: 401 SEDRFLPRSRYIFW--SRAYLKTPPYLVL 321
           SED  +PR  Y+ W  S   +K P   VL
Sbjct: 800 SEDSVIPRILYLTWYSSNGDIKVPSTKVL 828


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +2

Query: 8   YVRIHPFHLLF 40
           + R+ PFHL+F
Sbjct: 211 FCRVFPFHLMF 221


>AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-like
           protein protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +2

Query: 308 RYGELGLSMGAFLNKPETKKYNES 379
           RY  LG    A LN    KKY E+
Sbjct: 46  RYAFLGAFEAAHLNAEGMKKYCET 69


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +2

Query: 8   YVRIHPFHLLF 40
           + R+ PFHL+F
Sbjct: 211 FCRVFPFHLMF 221


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 46  YDSYELDLSSRSTQ 87
           YD Y+L+L  +S Q
Sbjct: 154 YDGYQLELEKQSEQ 167


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,340
Number of Sequences: 438
Number of extensions: 2315
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)